Miyakogusa Predicted Gene

Lj1g3v0807620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0807620.1 Non Chatacterized Hit- tr|I1KA90|I1KA90_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.23237 PE,89.83,0,GENERAL
TRANSCRIPTION FACTOR IIH SUBUNIT 3,NULL; TRANSCRIPTION INITIATION
FACTOR IIH (TFIIH), POLYPE,CUFF.26357.1
         (294 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g11810.1                                                       490   e-139
Glyma04g42940.1                                                       476   e-134

>Glyma06g11810.1 
          Length = 294

 Score =  490 bits (1261), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/284 (85%), Positives = 251/284 (88%), Gaps = 1/284 (0%)

Query: 1   MPSAPSKLYADDVSLLVVTLDTNPXXXXXXXXXXXXXLSQVLAFLNSILLLGQLNQVVVI 60
           MPSA SKLYADDVSLLVVTLDTNP             LSQVLAFLNSILLLGQLNQV+VI
Sbjct: 1   MPSASSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNSILLLGQLNQVIVI 60

Query: 61  ATGCNSCGYVYDSASDKNHASTTGTMPALYSNLLRNLEQFVARDQQLAA-ANHAPGTVPX 119
           ATGCNSCGY+YDS SDKNH STTGTMPALYSNLL NL++F+ARD+QL A A HAPGTVP 
Sbjct: 61  ATGCNSCGYIYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADAAHAPGTVPS 120

Query: 120 XXXXXXXXMALCYIQRAFRSGPMHPQPRILCLHGSADGPEQYVAIMNAIFSAQHSTVPID 179
                   MALCYIQRAFRSGPM PQPRILCL G ADGPEQYVAIMNAIFSAQHSTVPID
Sbjct: 121 SLLSGSLSMALCYIQRAFRSGPMPPQPRILCLQGVADGPEQYVAIMNAIFSAQHSTVPID 180

Query: 180 SCYIGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSRAFLRLPKSVGVDF 239
           SCYIGSNNSAFLQQASYITGGIYY+PPQLDGL+QYLSTVFATDLHSRAFLRLPKSVGVDF
Sbjct: 181 SCYIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDF 240

Query: 240 RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQSD 283
           RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQ D
Sbjct: 241 RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQLD 284


>Glyma04g42940.1 
          Length = 276

 Score =  476 bits (1225), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/275 (85%), Positives = 245/275 (89%), Gaps = 1/275 (0%)

Query: 1   MPSAPSKLYADDVSLLVVTLDTNPXXXXXXXXXXXXXLSQVLAFLNSILLLGQLNQVVVI 60
           MPSAPSKLYADDVSLLVVTLDTNP             LSQVLAFLN+ILLLGQLNQV+VI
Sbjct: 1   MPSAPSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNTILLLGQLNQVIVI 60

Query: 61  ATGCNSCGYVYDSASDKNHASTTGTMPALYSNLLRNLEQFVARDQQLAA-ANHAPGTVPX 119
           ATGCNSCGYVYDS SDKNH STTGTMPALYSNLL NL++F+ARD+QL A A+HAPG VP 
Sbjct: 61  ATGCNSCGYVYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADASHAPGIVPS 120

Query: 120 XXXXXXXXMALCYIQRAFRSGPMHPQPRILCLHGSADGPEQYVAIMNAIFSAQHSTVPID 179
                   MALCYIQRAFRSGPM PQPRILCL G+ADGPEQYVAIMNAIFSAQHSTVPID
Sbjct: 121 SLLSGSLSMALCYIQRAFRSGPMPPQPRILCLQGAADGPEQYVAIMNAIFSAQHSTVPID 180

Query: 180 SCYIGSNNSAFLQQASYITGGIYYRPPQLDGLFQYLSTVFATDLHSRAFLRLPKSVGVDF 239
           SCYIGSNNSAFLQQASYITGGIYY+PPQLDGL+QYLSTVFATDLHSRAFLRLPKSVGVDF
Sbjct: 181 SCYIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDF 240

Query: 240 RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCG 274
           RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCG
Sbjct: 241 RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCG 275