Miyakogusa Predicted Gene

Lj1g3v0725880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0725880.1 tr|B9IDQ6|B9IDQ6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_775696 PE=4
SV=1,28.85,0.000001,seg,NULL; WRC,WRC; DNA binding domain with
preference for A/T r,AT hook, DNA-binding motif,CUFF.26234.1
         (787 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g25940.1                                                       356   5e-98

>Glyma14g25940.1 
          Length = 936

 Score =  356 bits (914), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 356/904 (39%), Positives = 452/904 (50%), Gaps = 172/904 (19%)

Query: 1   MDETG--EECRRCGRKAPPGWRCTERALSGKSVCERHFLYNQKKTERWKE----GASGIT 54
           MDE G  EE RRC R A  GWRC ERA+ G+S CERHFLY Q++    K+    G  G+ 
Sbjct: 1   MDEPGDEEEFRRCTRSASGGWRCKERAMRGRSFCERHFLYQQQRNRSAKKKRASGGVGVP 60

Query: 55  PKR-RSGRRKPVDNSENGVVDDGCKELFGDP-----NGTPTVVDEFTGLCGVSEG-DAGV 107
            KR    R+KP  + ENGVV  G     GD       G P VV+EF GL G  EG D GV
Sbjct: 61  QKRGMKQRKKPEGDLENGVVGAGVVGADGDGADGDHTGGPHVVEEFAGLFG--EGHDGGV 118

Query: 108 NLNLGCESLNLQDKGE-EGQQVHSGGFGEGCGRMGQVLGD-YGVEYAEDRNAVAGLGAFR 165
           NL LGCES +L   GE EGQ VH GGFG GCG++GQV G   G  ++   NA AG G F 
Sbjct: 119 NLGLGCESFDLW--GEVEGQHVHMGGFGGGCGKLGQVEGQVLGQPWS---NANAGGGVFD 173

Query: 166 NVGNEDHGCVAGRNVCVNDRLGLPSEGIESLIGEEPGFGSFQALLCKDRGCAEDVIFIGD 225
            V    H   AG  VC ND L L S G+E+        G FQALLC+  GC EDV FIG 
Sbjct: 174 AVLG-GHASGAGVGVCENDFLDLSSGGLEADFDSLYDQG-FQALLCQGGGCEEDVGFIGS 231

Query: 226 ------------VTGFEGLSGENTHGFR-DEVGGFVENPCFEGENDSNKEG----PGSN- 267
                        TGF+GLSGEN + FR +EV G V NP   G+ + +  G    PGSN 
Sbjct: 232 DWAIPNFAALGGSTGFQGLSGENAYQFRGEEVAGCVGNPGGYGKVEDDSFGGIDVPGSNS 291

Query: 268 ---------YKMSALGFEEEIGLLLSRGGTTNEEARCEALRPLSKRGRPKGSKNENDNKQ 318
                     KM  LG EE +  LL  G  ++EEA+  A RP+++RGRPKGSKN+  +KQ
Sbjct: 292 RHHGDNASDSKMLVLGVEEGMERLLDGGLASSEEAKGVAFRPVARRGRPKGSKNK--DKQ 349

Query: 319 LSTALDGQSVGGDDNAGTIGMSSVTDLGI------------EIA---------------- 350
             T L+ QSVG +   GT G+SSVT  G             EIA                
Sbjct: 350 FHTTLNRQSVGENVKGGTNGISSVTVSGSVFKAVDEGAVLGEIARPKKRGRQNGLNTVNN 409

Query: 351 -------------------VLSGEKDKSSDEVADLGETARAEKSGRPKVSKNKIRRVEHV 391
                              + SGE+DK+ DEVA LGE  R +K  RPK S N++  +  +
Sbjct: 410 VTILESERSVFFFLESERSLFSGEEDKAEDEVAGLGEIVRPKKRDRPKGS-NRMSIITVL 468

Query: 392 GN---VVAV-------------KIVGPKKHGRPKSSKCRKKNIMXXXXXXXXXXXXXKKL 435
            +   +++V             +IV PKK GRPK S+  KKNI+             KKL
Sbjct: 469 KSERPLLSVEEGSADDEGAGLGEIVRPKKRGRPKGSR-NKKNILHVSNNVVVMFAGPKKL 527

Query: 436 GRPKGSLNKLKNTVDCNNEGSGAGEIVXXXXXXXXXXSKNKVNNIMEVSKKAASGGDCKI 495
           GRP+GS  + K+ V   N+    GEI           SKNK+ N++EV  + A  G+  I
Sbjct: 528 GRPEGSEGRKKSVVLVGNK--VVGEIAGPNKCGKTKGSKNKIKNVVEVGNEVAGAGE--I 583

Query: 496 AGPKKCGRPKGSKNKQKNIVQVSQEVAGSADCEIAGPKKCGRPKGSMKKRKSLVCASILE 555
           AGPKK GRP+GS   +KN ++V+ EV+G+   EI G KK GRPKGS KKR ++V AS  E
Sbjct: 584 AGPKKHGRPRGSTKIKKNALEVNNEVSGAG--EITGFKKRGRPKGSTKKRYTVVYASSNE 641

Query: 556 GAGGITREGLENKMLSNLCQEHIEYTQPVVRGGRPKGSRNKKIKLAFQDMVDEVRFANKE 615
            A  + R+ LENKMLSNLCQ   + +  +V       S N K   A     +   F    
Sbjct: 642 VACEVARQDLENKMLSNLCQ---KVSDELV-------SINNKYGPAMSTRSNSRSF---- 687

Query: 616 SDKATCAVGEEQKDHGSDIGKPIGLDND---KATLASDRDQETPNQTLAQDEVQNDKSSV 672
                  V E QK  G  +   I L+ D    +  +S  ++E         E++N K + 
Sbjct: 688 -------VFEGQKFPG--MSNDINLEGDGGSTSVWSSGLEKEKGRSPKPVKEIENSKITW 738

Query: 673 K-PKRGRPKGSKNK-----------------MKSIANKARNKFGKVRNMRGRPKGSLRKK 714
              KRGRPKGS+NK                  KS A +A N F K    RGRPKGS RK+
Sbjct: 739 PIVKRGRPKGSRNKKIKLIGQVRTKHGRPKGYKSKAEEAGNNFDKGGKKRGRPKGSHRKE 798

Query: 715 NETAYCLDSQNERNSL----DGRTSTEAAYRNDVDLHRGHCSQEELLRMLSVEHKNIQGV 770
            E+AY  DS  ER+ L    +G TS E+A +ND    +   S +   R+     K  Q  
Sbjct: 799 KESAYHFDSLIERHGLVAEKEGGTSAESASKNDTGQEKKIYSCQRSSRITRQAIKQSQSR 858

Query: 771 GVEE 774
           G++E
Sbjct: 859 GLKE 862