Miyakogusa Predicted Gene
- Lj1g3v0715500.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0715500.2 Non Chatacterized Hit- tr|A5C5P2|A5C5P2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,38.5,9e-19,SUBFAMILY NOT NAMED,NULL; LUPUS LA
PROTEIN-RELATED,NULL; La,RNA-binding protein Lupus La; no
descrip,CUFF.26200.2
(244 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma02g05090.1 295 2e-80
Glyma16g23170.1 288 5e-78
Glyma01g36800.1 230 9e-61
Glyma11g08500.1 228 5e-60
Glyma17g37950.1 135 3e-32
Glyma14g40180.1 131 6e-31
Glyma06g02460.1 131 7e-31
Glyma04g02410.1 130 1e-30
Glyma02g44310.1 108 7e-24
Glyma14g04490.1 104 8e-23
Glyma15g10160.1 64 1e-10
Glyma07g33140.1 64 2e-10
Glyma13g28880.3 64 2e-10
Glyma02g15300.1 63 2e-10
Glyma13g28880.1 63 3e-10
Glyma19g45320.3 58 8e-09
Glyma19g45320.1 58 8e-09
Glyma03g42540.2 54 2e-07
Glyma03g42540.1 54 2e-07
>Glyma02g05090.1
Length = 472
Score = 295 bits (756), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 149/205 (72%), Positives = 165/205 (80%)
Query: 40 GNSIGFXXXXXXXXXXXXXXLDSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFS 99
G SIGF L+S+RGV FV PIPPNAMFFQP D QLHT IVNQ+DYYFS
Sbjct: 268 GGSIGFPELPPQMIYVPPPPLESMRGVPFVSPIPPNAMFFQPSDNQLHTKIVNQIDYYFS 327
Query: 100 NENLVKDIYLRQNMDDQGFVPINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRR 159
NENLVKDIYLR+NMDDQG+V INLIAGFKKVK LT+NIQIVLDAVR+SS VEVQGDKIRR
Sbjct: 328 NENLVKDIYLRRNMDDQGWVTINLIAGFKKVKYLTENIQIVLDAVRTSSVVEVQGDKIRR 387
Query: 160 RNDWRRWLMPPVQISNVTAPQTVGQLTEQVQSISLETTKSDAAGGQDVSHSRPLGDFNSQ 219
RNDWRRW+MP Q+ NV QTVGQL E+VQ+I+LE T ++ AG DVS +RP GD NSQ
Sbjct: 388 RNDWRRWIMPGGQVPNVRGSQTVGQLAERVQNITLERTNNNDAGVLDVSQNRPFGDLNSQ 447
Query: 220 YMLSTSEGTGQVGIQVSDHSISARN 244
Y+ STSEGT QVGIQVSDHSISARN
Sbjct: 448 YLHSTSEGTAQVGIQVSDHSISARN 472
>Glyma16g23170.1
Length = 433
Score = 288 bits (736), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 142/185 (76%), Positives = 159/185 (85%)
Query: 60 LDSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFV 119
L+S+RGV FV PIPPNAMFFQP D QLHT IVNQ+DYYFSNENLVKD YLR+NMDDQG+V
Sbjct: 249 LESMRGVPFVSPIPPNAMFFQPLDNQLHTKIVNQIDYYFSNENLVKDTYLRRNMDDQGWV 308
Query: 120 PINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMPPVQISNVTAP 179
PINLIAGFKKVK LT+NIQIVLDAVR+SS VEVQGDKIRRRNDWRRW++P + NV
Sbjct: 309 PINLIAGFKKVKYLTENIQIVLDAVRTSSVVEVQGDKIRRRNDWRRWILPAGLVPNVRGS 368
Query: 180 QTVGQLTEQVQSISLETTKSDAAGGQDVSHSRPLGDFNSQYMLSTSEGTGQVGIQVSDHS 239
QTVGQL EQVQ+I+LETT +D AG D S +R GD NSQY++STSEGT QVGIQVSDHS
Sbjct: 369 QTVGQLAEQVQNIALETTINDNAGILDDSQNRTFGDSNSQYLISTSEGTAQVGIQVSDHS 428
Query: 240 ISARN 244
+SARN
Sbjct: 429 VSARN 433
>Glyma01g36800.1
Length = 334
Score = 230 bits (587), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 144/195 (73%), Gaps = 21/195 (10%)
Query: 61 DSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFVP 120
DSLRGV FVPP+P + +FF PDPQLH+ IVNQVDYYFSNENLVKD +LRQNMDDQG+VP
Sbjct: 150 DSLRGVPFVPPMPHHPLFFTGPDPQLHSKIVNQVDYYFSNENLVKDAFLRQNMDDQGWVP 209
Query: 121 INLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLM-PPVQISNVTAP 179
I LIAGF KV LTDNIQ++LDA+++SS VEVQGDKIRR+NDWRRW+M PPVQ SN T
Sbjct: 210 IKLIAGFNKVMHLTDNIQVILDAIQTSSVVEVQGDKIRRQNDWRRWIMHPPVQFSNAT-- 267
Query: 180 QTVG-----QLTEQVQSISLETTKSDAAGGQDV-----SHSRPLGDFNSQYMLSTSEGTG 229
T+G +L EQVQ+I+LET+ D AGG DV H GD LSTS
Sbjct: 268 -TIGVLNPDKLAEQVQNIALETSNYDGAGGLDVQPDTSQHRSTFGDLQ---QLSTS---- 319
Query: 230 QVGIQVSDHSISARN 244
QVGIQ SDH I ARN
Sbjct: 320 QVGIQGSDHFIPARN 334
>Glyma11g08500.1
Length = 510
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 123/184 (66%), Positives = 138/184 (75%), Gaps = 14/184 (7%)
Query: 61 DSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFVP 120
DSLRGV FVPP+P +++FF PDPQLH IVNQVDYYFSNENLVKD +LRQNMDDQG+VP
Sbjct: 314 DSLRGVPFVPPMPHHSLFFTGPDPQLHNKIVNQVDYYFSNENLVKDTFLRQNMDDQGWVP 373
Query: 121 INLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLM-PPVQISNVTAP 179
I LIAGF KV LTDNIQ++LDA+R+SS VEVQGDKIRRRNDWRRW+M PPVQ SN T
Sbjct: 374 IKLIAGFNKVMHLTDNIQVILDAIRTSSVVEVQGDKIRRRNDWRRWIMHPPVQFSNAT-- 431
Query: 180 QTVG-----QLTEQVQSISLETTKSDAAGGQDV--SHSRPLGDFNSQYMLSTSE--GTGQ 230
T+G L EQV +I+LET+ D AGG DV SR F LSTSE G GQ
Sbjct: 432 -TIGVLNPDMLAEQVHNIALETSDYDGAGGPDVLPDTSRHRSTFR-DLQLSTSEGPGPGQ 489
Query: 231 VGIQ 234
VGIQ
Sbjct: 490 VGIQ 493
>Glyma17g37950.1
Length = 477
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 91/141 (64%)
Query: 60 LDSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFV 119
++ G+SF PP FF + L MIV Q++YYFS+ NLVKD +LR MD+QG+V
Sbjct: 318 VEQFTGMSFFAHSPPPTPFFSAAESPLSNMIVYQIEYYFSDANLVKDAFLRSKMDEQGWV 377
Query: 120 PINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMPPVQISNVTAP 179
P+ LIA F +VK LT NIQ++LD++R+S+ VEVQGDK+RR N+W+RWL + S
Sbjct: 378 PVTLIADFPRVKSLTTNIQLILDSIRTSAIVEVQGDKLRRLNEWKRWLSSTQRGSTSPIG 437
Query: 180 QTVGQLTEQVQSISLETTKSD 200
LT +Q+I LE T D
Sbjct: 438 SRYNNLTTNLQTIKLEETIKD 458
>Glyma14g40180.1
Length = 492
Score = 131 bits (330), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 94/150 (62%), Gaps = 4/150 (2%)
Query: 60 LDSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFV 119
++ G+ F PP FF + L MIV Q++YYFS+ NLVKD +LR MD+QG+V
Sbjct: 332 VEQFTGMPFFTHSPPPTPFFSAAESPLSNMIVYQIEYYFSDANLVKDAFLRSKMDEQGWV 391
Query: 120 PINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMPPVQISN---- 175
P+ LIA F +VK LT NIQ++LD++R+S+ VEVQGDK+RR N+W RWL + SN
Sbjct: 392 PVTLIADFPRVKNLTTNIQLILDSLRTSTVVEVQGDKLRRLNEWMRWLPSAQRRSNSGSI 451
Query: 176 VTAPQTVGQLTEQVQSISLETTKSDAAGGQ 205
+ T LT Q+I LE T +D + Q
Sbjct: 452 SPSGSTHNNLTANFQTIILEETTADESPTQ 481
>Glyma06g02460.1
Length = 487
Score = 131 bits (329), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 60 LDSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFV 119
+ G+ F PP AMF+ + L I NQ+DYYFS+ NLVKD YLR NMD+QG+V
Sbjct: 314 FEPFGGMPFFTHAPPPAMFYPVAETPLTNTIANQIDYYFSDANLVKDEYLRSNMDEQGWV 373
Query: 120 PINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMPPVQI 173
PI+LIA F +V+ LT NI+++LD++R+S+ VEVQGDK+RRR +W +WL P VQ+
Sbjct: 374 PISLIASFPRVRSLTSNIKLILDSLRTSTFVEVQGDKLRRRTEWMKWL-PSVQL 426
>Glyma04g02410.1
Length = 520
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/108 (54%), Positives = 78/108 (72%)
Query: 60 LDSLRGVSFVPPIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFV 119
+ G+ F PP AMFF + L I NQ+DYYFS+ NLVKD YLR NMD+QG+V
Sbjct: 345 FEPFGGMPFFTHAPPPAMFFPVAETPLTNTIANQIDYYFSDANLVKDEYLRSNMDEQGWV 404
Query: 120 PINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWL 167
PI LIA F +V+ LT NI+++LD++R+S+ VEVQGDK+RR N+W +WL
Sbjct: 405 PITLIASFPRVRSLTSNIKLILDSLRTSTVVEVQGDKLRRCNEWMKWL 452
>Glyma02g44310.1
Length = 918
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 10/148 (6%)
Query: 62 SLRGVS---FVP-PIPPNAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQG 117
S+RG FVP P+ P P L T IV Q+DYYFS+ENL D YL MDDQG
Sbjct: 271 SIRGPHPRHFVPYPVNPTPQPLPPETVPLRTSIVKQIDYYFSDENLQNDHYLISLMDDQG 330
Query: 118 FVPINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQGDKIRRRNDWRRWLMPPVQISNVT 177
+VPI+ +A FK+VK ++ +I +LDA++SS+ VEV+GDKIR+ N W +W ++IS+
Sbjct: 331 WVPISTVADFKRVKKMSTDIAFILDALQSSNTVEVEGDKIRKHNSWSKW----IRISSGN 386
Query: 178 APQTVGQLT--EQVQSISLETTKSDAAG 203
+ + Q+ E V SDA G
Sbjct: 387 SESSTDQIQQGELVDGAVNSLENSDAVG 414
>Glyma14g04490.1
Length = 855
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/82 (57%), Positives = 64/82 (78%)
Query: 86 LHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFVPINLIAGFKKVKLLTDNIQIVLDAVR 145
L T IV Q+DYYFS+ENL D YL MDDQG+VPI+ +A FK+VK ++ +I +LDA++
Sbjct: 272 LRTSIVKQIDYYFSDENLQNDHYLISLMDDQGWVPISTVADFKRVKKMSTDIPFILDALQ 331
Query: 146 SSSAVEVQGDKIRRRNDWRRWL 167
SS+ VEVQGDKIR+R+ W +W+
Sbjct: 332 SSNTVEVQGDKIRQRDSWSKWI 353
>Glyma15g10160.1
Length = 405
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 86 LHTMIVNQVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIVLDA 143
L I+ QV+YYFS+ENL D YL + +GFVP+++IA F+K+K LT + ++ A
Sbjct: 103 LKLKIIKQVEYYFSDENLPTDKYLLGFVKRNKEGFVPVSVIASFRKIKKLTRDHAFIVAA 162
Query: 144 VRSSSAVEVQGD--KIRRRNDWR 164
++ SS + V GD +++R N R
Sbjct: 163 LKESSLLVVSGDGKRVKRLNPLR 185
>Glyma07g33140.1
Length = 399
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 12/143 (8%)
Query: 84 PQLHTMIVNQVDYYFSNENLV--KDIYLRQNMDDQGFVPINLIAGFKKVKLLTDNIQIVL 141
P L IV QV+Y FS+ +L+ + + + N D +G+VPI +IA KKVK L NI ++
Sbjct: 93 PDLQQKIVKQVEYQFSDMSLLANESFHKQINKDPEGYVPITVIASTKKVKSLVSNINMLT 152
Query: 142 DAVRSSSA--VEVQGDKIRRRNDWRRWLMPPVQISNVTAPQTVGQLTEQ-VQSI-----S 193
A+RSSS + V G K++R++ + +Q V A + Q +Q I S
Sbjct: 153 QAIRSSSKLVLSVDGKKVKRKHPYTEREKEDLQSRTVVAENLPDDHSHQNLQKIFGMVGS 212
Query: 194 LETTKSDAAGGQDVSHSRPLGDF 216
++T + Q+ + SRP DF
Sbjct: 213 VKTIR--ICHPQEPNSSRPKSDF 233
>Glyma13g28880.3
Length = 378
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 86 LHTMIVNQVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIVLDA 143
L I+ Q +YYFS+ENL D YL + +GFVP+++IA F+K+K LT + ++ A
Sbjct: 99 LKLKIIKQAEYYFSDENLPTDKYLLGFVKRNKEGFVPVSVIASFRKIKKLTRDHAFIVAA 158
Query: 144 VRSSSAVEVQGD--KIRRRNDWR 164
++ SS + V GD +++R N R
Sbjct: 159 LKESSLLVVSGDGRRVKRLNPLR 181
>Glyma02g15300.1
Length = 404
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
Query: 84 PQLHTMIVNQVDYYFSNENLV--KDIYLRQNMDDQGFVPINLIAGFKKVKLLTDNIQIVL 141
P L IV QV+Y FS+ +L+ + + + N D +G+VPI +IA KKVK L NI ++
Sbjct: 95 PDLQQKIVKQVEYQFSDMSLLANESFHKQMNKDPEGYVPITVIASTKKVKSLVSNINMLT 154
Query: 142 DAVRSSSA--VEVQGDKIRRRNDW 163
A+RSSS + V G K++R++ +
Sbjct: 155 QAIRSSSKLVLSVDGKKVKRKHPY 178
>Glyma13g28880.1
Length = 400
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 86 LHTMIVNQVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIVLDA 143
L I+ Q +YYFS+ENL D YL + +GFVP+++IA F+K+K LT + ++ A
Sbjct: 99 LKLKIIKQAEYYFSDENLPTDKYLLGFVKRNKEGFVPVSVIASFRKIKKLTRDHAFIVAA 158
Query: 144 VRSSSAVEVQGD--KIRRRNDWR 164
++ SS + V GD +++R N R
Sbjct: 159 LKESSLLVVSGDGRRVKRLNPLR 181
>Glyma19g45320.3
Length = 467
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 90 IVNQVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIVLDAVRSS 147
I+NQV+YYFS+ NL +L + N D +GFVPI+++A FKK+K L + + +R+S
Sbjct: 154 ILNQVEYYFSDLNLATTDHLMRFVNKDPEGFVPISVVASFKKIKALIASHSQLATVLRNS 213
Query: 148 SAVEVQ--GDKIRRR 160
S + V G KI+R+
Sbjct: 214 SKLVVSEDGKKIKRQ 228
>Glyma19g45320.1
Length = 468
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 90 IVNQVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIVLDAVRSS 147
I+NQV+YYFS+ NL +L + N D +GFVPI+++A FKK+K L + + +R+S
Sbjct: 154 ILNQVEYYFSDLNLATTDHLMRFVNKDPEGFVPISVVASFKKIKALIASHSQLATVLRNS 213
Query: 148 SAVEVQ--GDKIRRR 160
S + V G KI+R+
Sbjct: 214 SKLVVSEDGKKIKRQ 228
>Glyma03g42540.2
Length = 523
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 93 QVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIVLDAVRSSSAV 150
QV+YYFS+ NL +L + N D +GFVPI+++A FKK+K L + + +R+SS +
Sbjct: 213 QVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALIASHSQLATVLRNSSKL 272
Query: 151 EVQ--GDKIRRR 160
V G KI+R+
Sbjct: 273 VVSEDGKKIKRQ 284
>Glyma03g42540.1
Length = 524
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 93 QVDYYFSNENLVKDIYLRQ--NMDDQGFVPINLIAGFKKVKLLTDNIQIVLDAVRSSSAV 150
QV+YYFS+ NL +L + N D +GFVPI+++A FKK+K L + + +R+SS +
Sbjct: 213 QVEYYFSDLNLATTDHLMRFINKDPEGFVPISVVASFKKIKALIASHSQLATVLRNSSKL 272
Query: 151 EVQ--GDKIRRR 160
V G KI+R+
Sbjct: 273 VVSEDGKKIKRQ 284