Miyakogusa Predicted Gene

Lj1g3v0627420.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0627420.1 tr|G7I7Z0|G7I7Z0_MEDTR Cleavage and
polyadenylation specificity factor subunit OS=Medicago
truncatul,63.53,6e-19,IMMUNOGLOBULIN-BINDING PROTEIN 1,NULL;
IMMUNOGLOBULIN-BINDING PROTEIN 1,TAP42-like protein;
TAP42,TA,gene.g29974.t1.1
         (137 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g41350.1                                                       216   5e-57
Glyma06g13500.1                                                       191   2e-49
Glyma01g10270.1                                                        90   7e-19
Glyma19g22260.1                                                        69   2e-12

>Glyma04g41350.1 
          Length = 398

 Score =  216 bits (550), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 106/135 (78%), Positives = 119/135 (88%), Gaps = 5/135 (3%)

Query: 6   VEELPLPALFEQAREIHATA---NADQKVVKKGYETLQKCEDMVNKLGLFSSNETKEDIS 62
           ++++PLPALFEQAR+IHA A    ADQ+VVKKG E L +CEDMVN LGLFS NETKEDIS
Sbjct: 1   MDDMPLPALFEQARKIHAAATDSGADQEVVKKGCEALHRCEDMVNNLGLFSPNETKEDIS 60

Query: 63  TGNLKYILALVPFYLAEMTEQIAQDDRIQIVKASQTKLKEFISFCEAMELVPKEELESYT 122
           T NLKYIL  VPFYLAE+TE+IAQDDRIQI+K+SQ KLKEFISFCEAMELVPKEELESY 
Sbjct: 61  TTNLKYIL--VPFYLAELTEKIAQDDRIQILKSSQAKLKEFISFCEAMELVPKEELESYI 118

Query: 123 QGAPKSVADQRARKL 137
            GAPK+VADQRARK+
Sbjct: 119 DGAPKTVADQRARKI 133


>Glyma06g13500.1 
          Length = 423

 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/162 (63%), Positives = 117/162 (72%), Gaps = 32/162 (19%)

Query: 6   VEELPLPALFEQAREIH-----ATANADQ-------------------------KVVKKG 35
           +E++PLPALFEQAR+IH       + ADQ                         +VVKKG
Sbjct: 1   MEDVPLPALFEQARKIHNSATATASAADQVRFSLLILSLFFFFCVLHRFVFGVREVVKKG 60

Query: 36  YETLQKCEDMVNKLGLFSSNETKEDISTGNLKYILALVPFYLAEMTEQIAQDDRIQIVKA 95
            E L +CEDMVN LGLFS NETKEDIST NLKYIL  VPFYLAE+TE++AQDDRI I+KA
Sbjct: 61  CEALHRCEDMVNNLGLFSPNETKEDISTTNLKYIL--VPFYLAELTEKLAQDDRIHILKA 118

Query: 96  SQTKLKEFISFCEAMELVPKEELESYTQGAPKSVADQRARKL 137
           SQ KLKEFISFCEAMELVPKEELESY +GA K+VADQRARK+
Sbjct: 119 SQAKLKEFISFCEAMELVPKEELESYIEGASKTVADQRARKI 160


>Glyma01g10270.1 
          Length = 68

 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 53/68 (77%), Gaps = 3/68 (4%)

Query: 6  VEELPLPALFEQAREIHATANAD---QKVVKKGYETLQKCEDMVNKLGLFSSNETKEDIS 62
          +++LPL ALFEQAR+IH T       Q+VVKKG E L +CEDMVN LGLFS NETKEDI+
Sbjct: 1  MDDLPLSALFEQARKIHTTTTDSSTDQEVVKKGCEALHRCEDMVNNLGLFSPNETKEDIN 60

Query: 63 TGNLKYIL 70
          T NLKYIL
Sbjct: 61 TTNLKYIL 68


>Glyma19g22260.1 
          Length = 223

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 34/41 (82%)

Query: 31 VVKKGYETLQKCEDMVNKLGLFSSNETKEDISTGNLKYILA 71
          VVKKG E L +CEDMVN LGLFS N+TKEDI+T NLKYIL 
Sbjct: 2  VVKKGCEALHRCEDMVNNLGLFSPNKTKEDINTTNLKYILV 42