Miyakogusa Predicted Gene

Lj1g3v0579550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0579550.1 Non Chatacterized Hit- tr|I3SPX8|I3SPX8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,82.98,0.00000000000006,CCT,CCT domain,CUFF.26224.1
         (124 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g07420.1                                                        74   3e-14
Glyma13g01290.1                                                        71   3e-13
Glyma04g06240.1                                                        52   2e-07
Glyma06g06300.1                                                        52   2e-07
Glyma08g28370.1                                                        49   1e-06

>Glyma17g07420.1 
          Length = 374

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/55 (69%), Positives = 40/55 (72%), Gaps = 3/55 (5%)

Query: 1   MVVSGGGGSQPATQLCGMDREARVLRYREKRKNRKFEKTIFHPGYDLMSSYANKR 55
           +VVSG    Q ATQLCGMDREARVLRYREKRKNRKFEKTI    Y    +YA  R
Sbjct: 283 VVVSGNSVGQGATQLCGMDREARVLRYREKRKNRKFEKTI---RYASRKAYAETR 334


>Glyma13g01290.1 
          Length = 365

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 36/40 (90%), Gaps = 3/40 (7%)

Query: 1   MVVSGGGGSQPATQLCGMDREARVLRYREKRKNRKFEKTI 40
           +VVSGG G   ATQLCGMDREARVLRYREKRKNRKFEKTI
Sbjct: 277 IVVSGGQG---ATQLCGMDREARVLRYREKRKNRKFEKTI 313


>Glyma04g06240.1 
          Length = 309

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/27 (85%), Positives = 23/27 (85%)

Query: 14  QLCGMDREARVLRYREKRKNRKFEKTI 40
           Q    DREARVLRYREKRKNRKFEKTI
Sbjct: 246 QFSAADREARVLRYREKRKNRKFEKTI 272


>Glyma06g06300.1 
          Length = 310

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/27 (85%), Positives = 23/27 (85%)

Query: 14  QLCGMDREARVLRYREKRKNRKFEKTI 40
           Q    DREARVLRYREKRKNRKFEKTI
Sbjct: 247 QFSAADREARVLRYREKRKNRKFEKTI 273


>Glyma08g28370.1 
          Length = 348

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 25/36 (69%)

Query: 5   GGGGSQPATQLCGMDREARVLRYREKRKNRKFEKTI 40
            G   Q  +    MDREARVLRYREK+K RKFEKTI
Sbjct: 264 SGPPIQVPSHFSPMDREARVLRYREKKKTRKFEKTI 299