Miyakogusa Predicted Gene
- Lj1g3v0524400.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0524400.1 tr|G7J8V5|G7J8V5_MEDTR 50S ribosomal protein L13
OS=Medicago truncatula GN=MTR_3g082760 PE=4
SV=1,75,0.00000001,rplM_bact: ribosomal protein L13,Ribosomal protein
L13, bacterial-type; RIBOSOMAL_L13,Ribosomal prot,CUFF.25940.1
(198 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma19g36450.1 281 3e-76
Glyma19g22420.2 277 6e-75
Glyma19g22420.1 277 6e-75
Glyma15g32540.1 88 5e-18
Glyma20g07500.1 78 6e-15
>Glyma19g36450.1
Length = 200
Score = 281 bits (719), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 141/200 (70%), Positives = 148/200 (74%), Gaps = 2/200 (1%)
Query: 1 MKMLTSFN--MKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYAPN 58
MKM+T+FN MKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTY PN
Sbjct: 1 MKMVTAFNGNMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYTPN 60
Query: 59 RDDGDMCIVLNAKDVCVTGRKFKDKVYYWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILR 118
RDDGDMCIVLNAKD+CVTGRK DKVYYWHTGY+G LKQRTLK+QMAKDPTEVIRKA+LR
Sbjct: 61 RDDGDMCIVLNAKDICVTGRKLTDKVYYWHTGYIGHLKQRTLKDQMAKDPTEVIRKAVLR 120
Query: 119 MLPRNXXXXXXXXXXXIFPGSEHPFADRPLEQYEMPPXXXXXXXXXXXXXXXXXXXXXXX 178
MLPRN IFPGSEHPF DRPLE Y MPP
Sbjct: 121 MLPRNKLRDDRDRKLRIFPGSEHPFVDRPLEPYVMPPRSVREMRPRARRAMIRAQKKAEQ 180
Query: 179 XXXXXDGTKGEKSEAQGESA 198
DG KG+ EAQ ESA
Sbjct: 181 QQQKADGMKGKNGEAQEESA 200
>Glyma19g22420.2
Length = 201
Score = 277 bits (708), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 141/201 (70%), Positives = 148/201 (73%), Gaps = 3/201 (1%)
Query: 1 MKMLTSF--NMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYAPN 58
MKM+T+F NMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTY PN
Sbjct: 1 MKMVTAFTGNMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYTPN 60
Query: 59 RDDGDMCIVLNAKDVCVTGRKFKDKVYYWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILR 118
RDDGDMCIVLNAKD+CVTGRK DKVYYWHTGY+G LKQRTLK+QMAKDPTEVIRKA+LR
Sbjct: 61 RDDGDMCIVLNAKDICVTGRKLTDKVYYWHTGYIGHLKQRTLKDQMAKDPTEVIRKAVLR 120
Query: 119 MLPRNXXXXXXXXXXXIFPGSEHPFADRPLEQYEMPPXXXXXXXXXXXXXXXXXXXXXXX 178
MLPRN IFPGSEHPF DRPLE Y MPP
Sbjct: 121 MLPRNKLRDDRDRKLRIFPGSEHPFVDRPLEPYVMPPRSVREMRPRARRAMIRAQKKAEQ 180
Query: 179 XXXXXDGT-KGEKSEAQGESA 198
DG KG+ EAQ ESA
Sbjct: 181 QQQKADGMKKGKNGEAQEESA 201
>Glyma19g22420.1
Length = 201
Score = 277 bits (708), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 141/201 (70%), Positives = 148/201 (73%), Gaps = 3/201 (1%)
Query: 1 MKMLTSF--NMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYAPN 58
MKM+T+F NMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTY PN
Sbjct: 1 MKMVTAFTGNMKKAAAGLRRINLDGLRWRVFDAKGQVLGRLASQIATVVQGKDKPTYTPN 60
Query: 59 RDDGDMCIVLNAKDVCVTGRKFKDKVYYWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILR 118
RDDGDMCIVLNAKD+CVTGRK DKVYYWHTGY+G LKQRTLK+QMAKDPTEVIRKA+LR
Sbjct: 61 RDDGDMCIVLNAKDICVTGRKLTDKVYYWHTGYIGHLKQRTLKDQMAKDPTEVIRKAVLR 120
Query: 119 MLPRNXXXXXXXXXXXIFPGSEHPFADRPLEQYEMPPXXXXXXXXXXXXXXXXXXXXXXX 178
MLPRN IFPGSEHPF DRPLE Y MPP
Sbjct: 121 MLPRNKLRDDRDRKLRIFPGSEHPFVDRPLEPYVMPPRSVREMRPRARRAMIRAQKKAEQ 180
Query: 179 XXXXXDGT-KGEKSEAQGESA 198
DG KG+ EAQ ESA
Sbjct: 181 QQQKADGMKKGKNGEAQEESA 201
>Glyma15g32540.1
Length = 243
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 26 WRVFDAKGQVLGRLASQIATVVQGKDKPTYAPNRDDGDMCIVLNAKDVCVTGRKFKDKVY 85
W V DA +VLGRLAS IA ++GK+ TY P+ D G IV+NA+ V V+G+K K+Y
Sbjct: 107 WYVVDATDKVLGRLASTIAIHIRGKNLATYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLY 166
Query: 86 YWHTGYVGGLKQRTLKEQMAKDPTEVIRKAILRMLPRNXXXXXXXXXXXIFPGSEHPF-A 144
H+G GG+ T + + P +I A+ MLP+ ++ G +HP A
Sbjct: 167 RRHSGRPGGMTVETFAQLQNRIPERIIEHAVRGMLPKGRLGRRLFTHLKVYKGPDHPHAA 226
Query: 145 DRPLE 149
+P+E
Sbjct: 227 QKPVE 231
>Glyma20g07500.1
Length = 86
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 38/52 (73%)
Query: 104 MAKDPTEVIRKAILRMLPRNXXXXXXXXXXXIFPGSEHPFADRPLEQYEMPP 155
MAKDPTEVIRKA+LRMLPRN IFPGSEHPF DRPLE Y MPP
Sbjct: 1 MAKDPTEVIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFVDRPLEPYVMPP 52