Miyakogusa Predicted Gene

Lj1g3v0477780.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0477780.1 Non Chatacterized Hit- tr|C0PJV2|C0PJV2_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,57.3,3e-18,seg,NULL,CUFF.25898.1
         (320 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g20600.1                                                       479   e-135
Glyma04g33800.1                                                       247   1e-65

>Glyma06g20600.1 
          Length = 315

 Score =  479 bits (1232), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 233/318 (73%), Positives = 257/318 (80%), Gaps = 6/318 (1%)

Query: 6   MTGRTVNLTWWSHSKTVALIWLISAFFFYTLFQMAXXXXXXXXXXXXXXXXXXXTEQRSK 65
           MTG+ +NL   SHSKTV LIWLISAF F+TLFQMA                   T QRSK
Sbjct: 1   MTGKAMNL---SHSKTVVLIWLISAFCFFTLFQMALYNSSQTPSSTSLDSPNSNTGQRSK 57

Query: 66  LYDKMARDLDEHGAAFMKHGETSQSLTISDIFTVKDGYVTPVLKAANPPVRANILYLSTE 125
           LYDKM RDLDEHGAAF+KHGETSQSL++SDIFT+KDG VTPVLK ANPPVRAN+LYLSTE
Sbjct: 58  LYDKMGRDLDEHGAAFLKHGETSQSLSLSDIFTLKDGSVTPVLKPANPPVRANVLYLSTE 117

Query: 126 FSVPIAEAVKSIFSPHFEKAIWFQNSTMYHFSMFHASHHIVPVPXXXXXXXXXXXXXXXX 185
           FSVPIAEAVK++F+P+F+KAIWFQNS++YHFSMFHASHHIVPVP                
Sbjct: 118 FSVPIAEAVKNVFNPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAEASSVEAV 177

Query: 186 XXMLCPLKIVLDRVVLTSTGVLLGCWQVISGTDPITIRAKLKNVLPRAPEKQLYDASILH 245
              LCPLKIVLDRVVLTSTGVLLGCWQV SGTDPITIRAKLKN LP APEKQLYDA+ILH
Sbjct: 178 VATLCPLKIVLDRVVLTSTGVLLGCWQVTSGTDPITIRAKLKNALPHAPEKQLYDAAILH 237

Query: 246 TTFARLLGPS---STKERLETSDDVQFFHELVNRLNNQIHGFKAVVSELWYVEEYDVLAL 302
           T+FARLLGP    S  E+L  SDDVQFFH+LV+RLN+QIHGFKAVVSELWYVEEYDVLAL
Sbjct: 238 TSFARLLGPPKALSPSEQLRMSDDVQFFHDLVDRLNSQIHGFKAVVSELWYVEEYDVLAL 297

Query: 303 ALNGRMNVRKFKLGCSRD 320
           ALNGRMN RKF+L CS++
Sbjct: 298 ALNGRMNTRKFRLRCSKE 315


>Glyma04g33800.1 
          Length = 159

 Score =  247 bits (631), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 116/153 (75%), Positives = 128/153 (83%), Gaps = 1/153 (0%)

Query: 60  TEQRSKLYDKMARDLDEHGAAFMKHGETSQSLTISDIFTVKDGYVTPVLKAANPPVRANI 119
           T QRSKLYDKM RDLDEHGAAF+KHGETSQSL++SDIFT+KDG VTP LK ANPPVRAN+
Sbjct: 8   TGQRSKLYDKMGRDLDEHGAAFLKHGETSQSLSLSDIFTLKDGSVTPALKPANPPVRANV 67

Query: 120 LYLSTEFSVPIAEAVKSIFSPHFEKAIWFQNSTMYHFSMFHASHHIVPVPXXXXXXXXXX 179
           LYLSTEFSVPIAEAVK++F+P+F+KAIWFQNS++YHFSMFHASHHIVPVP          
Sbjct: 68  LYLSTEFSVPIAEAVKNVFNPYFDKAIWFQNSSLYHFSMFHASHHIVPVPATKEEIEAEA 127

Query: 180 XXXXXXXXMLCPLKIVLDRVVLTSTGVLLGCWQ 212
                    LCPLKIVLDR VLTSTGVLLGCWQ
Sbjct: 128 SSVEVVAATLCPLKIVLDR-VLTSTGVLLGCWQ 159