Miyakogusa Predicted Gene

Lj1g3v0448970.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0448970.1 tr|G7LCX9|G7LCX9_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_8g076010 PE=4 SV=1,48.06,3e-19,seg,NULL;
no description,NULL,CUFF.25869.1
         (178 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g23130.1                                                        67   8e-12
Glyma07g02970.1                                                        67   1e-11
Glyma07g02980.1                                                        63   2e-10

>Glyma08g23130.1 
          Length = 559

 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/127 (40%), Positives = 66/127 (51%), Gaps = 8/127 (6%)

Query: 13  MSADTYLPEECWEYIFTLLNQPQQQYLEPVSLVSKQFLSITNRLQFSLAIXXXXXXXXXX 72
           MS   + PEECWE +F  +   +  +LE +SLV KQFLSITNRLQFSL I          
Sbjct: 1   MSVKNF-PEECWELVFRFIGHGR--HLESLSLVCKQFLSITNRLQFSLTIHDPTIPVLPR 57

Query: 73  XXXXXXNLTSLDLTRFHGELDALLLQISRHPLRLLTSLKLSHNQTTFPAHVVR---AESS 129
                  L  LDL+  +   + LL QIS+  L  L  L LS NQ T P   +R   ++  
Sbjct: 58  LLLRFPRLRILDLSHLNSHHEGLLRQISQSGLE-LDLLNLS-NQRTLPVDGLRELGSKMK 115

Query: 130 NLRQFLC 136
           NLR  +C
Sbjct: 116 NLRVLIC 122


>Glyma07g02970.1 
          Length = 577

 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 56/101 (55%), Gaps = 4/101 (3%)

Query: 14  SADTYLPEECWEYIFTLLNQPQQQYLEPVSLVSKQFLSITNRLQFSLAIXXXXXXXXXXX 73
           S + +LP+ECWE +   L     ++ EP+SL+S QFLSITNRL+ SL I           
Sbjct: 4   SEELHLPDECWELVLKFLKS--HRHFEPLSLLSTQFLSITNRLRTSLTISDPTLPLLPNL 61

Query: 74  XXXXXNLTSLDLTRF-HGELDALLLQISRHPLRLLTSLKLS 113
                 LTSLDLTR  H  L AL L ISR  L  L SL LS
Sbjct: 62  FLRFPFLTSLDLTRLHHSHLHALFLHISRATLP-LQSLNLS 101


>Glyma07g02980.1 
          Length = 509

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 19  LPEECWEYIFTLLNQPQQQYLEPVSLVSKQFLSITNRLQFSLAIXXXXXXXXXXXXXXXX 78
           LPEECWE +F  +   +  +LE +SLV KQFLSITNRLQFSL I                
Sbjct: 6   LPEECWELVFRFIGHGR--HLESLSLVCKQFLSITNRLQFSLTIYDPTIPLLPRLLLRFP 63

Query: 79  NLTSLDLTRFHGELDALLLQISR 101
            L  LD +  +G  +ALL QIS+
Sbjct: 64  RLRILDFSHLNGHHEALLHQISQ 86