Miyakogusa Predicted Gene
- Lj1g3v0426760.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0426760.1 Non Chatacterized Hit- tr|I1K1J8|I1K1J8_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,84.78,0,CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P,NULL;
P-loop containing nucleoside triphosphate hyd,CUFF.25895.1
(370 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma05g08830.2 654 0.0
Glyma05g08830.1 654 0.0
Glyma04g34690.1 596 e-170
Glyma06g19970.1 578 e-165
Glyma19g00340.1 276 2e-74
Glyma03g16380.1 78 1e-14
Glyma10g43930.1 52 8e-07
Glyma20g38670.1 51 2e-06
>Glyma05g08830.2
Length = 372
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/368 (85%), Positives = 343/368 (93%)
Query: 1 MGSSPSPDIYIPEQWSEAAGSIADSSTPPITLICGAKNGGKTIFSRYLLNVLLHRYSRVA 60
M SSPSPDIYIPEQWSEAA SIA SS PPI LICGAKN GKT FSRYLLNVLLH+Y++VA
Sbjct: 1 MDSSPSPDIYIPEQWSEAAESIAHSSMPPIALICGAKNCGKTTFSRYLLNVLLHKYTKVA 60
Query: 61 YLDTDVGQPEFTAPAFLSLTIVHQETPDITIPCLKTPERCLFFGDVSSKRDPTSYLNYVF 120
YLDTDVGQPEFT PAFLSLTIVH+ TPD+T+PCLKTPERCLFFGDVSSKRDP++YL+YVF
Sbjct: 61 YLDTDVGQPEFTPPAFLSLTIVHKVTPDLTVPCLKTPERCLFFGDVSSKRDPSTYLSYVF 120
Query: 121 AIYDYYRKEYCSLDKEENSPMIDLPLIVNTPGWVKGVGYSVLVDMLKYICPTHVVKLSIS 180
AIYDYY+K+YC +K EN + LPLIVNTPGWVKGVGY VLVDMLKYI PTHVVK+SI+
Sbjct: 121 AIYDYYQKKYCIYEKGENPCKVKLPLIVNTPGWVKGVGYDVLVDMLKYISPTHVVKISIA 180
Query: 181 SENKNLPAGQFWLDGEHNGTINLIEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQCF 240
SE KNLPAG+FWLDGEH+ TINLIEINSA QDSLNRS+LVQKDARLLRDLRIMAYF+QCF
Sbjct: 181 SEKKNLPAGEFWLDGEHDETINLIEINSAHQDSLNRSLLVQKDARLLRDLRIMAYFKQCF 240
Query: 241 PSDSDISTIKELAHSLASHCPYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAVDSEG 300
SDS+ISTIKELAH+LASHCPYEVPIASIKI+HLH EVPSSE+F+SLNA+IVGLAVDSEG
Sbjct: 241 SSDSNISTIKELAHALASHCPYEVPIASIKIRHLHCEVPSSEIFFSLNATIVGLAVDSEG 300
Query: 301 PENLPWCLGLGIVRGIDTIKGVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVQGCISP 360
PENLPWCLGLGIVRGIDT+KGVLYVITPVPH+SL+KVN+LLQGYIQIP CLLQVQGCISP
Sbjct: 301 PENLPWCLGLGIVRGIDTVKGVLYVITPVPHNSLEKVNVLLQGYIQIPSCLLQVQGCISP 360
Query: 361 YMSADVLT 368
YMSA+ LT
Sbjct: 361 YMSANTLT 368
>Glyma05g08830.1
Length = 372
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/368 (85%), Positives = 343/368 (93%)
Query: 1 MGSSPSPDIYIPEQWSEAAGSIADSSTPPITLICGAKNGGKTIFSRYLLNVLLHRYSRVA 60
M SSPSPDIYIPEQWSEAA SIA SS PPI LICGAKN GKT FSRYLLNVLLH+Y++VA
Sbjct: 1 MDSSPSPDIYIPEQWSEAAESIAHSSMPPIALICGAKNCGKTTFSRYLLNVLLHKYTKVA 60
Query: 61 YLDTDVGQPEFTAPAFLSLTIVHQETPDITIPCLKTPERCLFFGDVSSKRDPTSYLNYVF 120
YLDTDVGQPEFT PAFLSLTIVH+ TPD+T+PCLKTPERCLFFGDVSSKRDP++YL+YVF
Sbjct: 61 YLDTDVGQPEFTPPAFLSLTIVHKVTPDLTVPCLKTPERCLFFGDVSSKRDPSTYLSYVF 120
Query: 121 AIYDYYRKEYCSLDKEENSPMIDLPLIVNTPGWVKGVGYSVLVDMLKYICPTHVVKLSIS 180
AIYDYY+K+YC +K EN + LPLIVNTPGWVKGVGY VLVDMLKYI PTHVVK+SI+
Sbjct: 121 AIYDYYQKKYCIYEKGENPCKVKLPLIVNTPGWVKGVGYDVLVDMLKYISPTHVVKISIA 180
Query: 181 SENKNLPAGQFWLDGEHNGTINLIEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQCF 240
SE KNLPAG+FWLDGEH+ TINLIEINSA QDSLNRS+LVQKDARLLRDLRIMAYF+QCF
Sbjct: 181 SEKKNLPAGEFWLDGEHDETINLIEINSAHQDSLNRSLLVQKDARLLRDLRIMAYFKQCF 240
Query: 241 PSDSDISTIKELAHSLASHCPYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAVDSEG 300
SDS+ISTIKELAH+LASHCPYEVPIASIKI+HLH EVPSSE+F+SLNA+IVGLAVDSEG
Sbjct: 241 SSDSNISTIKELAHALASHCPYEVPIASIKIRHLHCEVPSSEIFFSLNATIVGLAVDSEG 300
Query: 301 PENLPWCLGLGIVRGIDTIKGVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVQGCISP 360
PENLPWCLGLGIVRGIDT+KGVLYVITPVPH+SL+KVN+LLQGYIQIP CLLQVQGCISP
Sbjct: 301 PENLPWCLGLGIVRGIDTVKGVLYVITPVPHNSLEKVNVLLQGYIQIPSCLLQVQGCISP 360
Query: 361 YMSADVLT 368
YMSA+ LT
Sbjct: 361 YMSANTLT 368
>Glyma04g34690.1
Length = 347
Score = 596 bits (1536), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/346 (82%), Positives = 317/346 (91%)
Query: 11 IPEQWSEAAGSIADSSTPPITLICGAKNGGKTIFSRYLLNVLLHRYSRVAYLDTDVGQPE 70
IPEQW EA SIA SS PI LICGAKN GKT FSRYLLN+LL++Y++VAYLDTDVGQPE
Sbjct: 1 IPEQWLEATESIAHSSMLPIALICGAKNCGKTTFSRYLLNILLNKYTKVAYLDTDVGQPE 60
Query: 71 FTAPAFLSLTIVHQETPDITIPCLKTPERCLFFGDVSSKRDPTSYLNYVFAIYDYYRKEY 130
FT PAFLSLTIVH+ TPD+T+PCLKTPERCLFFGDVS KRDP++YL+YVFAIY++YRKEY
Sbjct: 61 FTPPAFLSLTIVHKVTPDLTVPCLKTPERCLFFGDVSCKRDPSTYLSYVFAIYNHYRKEY 120
Query: 131 CSLDKEENSPMIDLPLIVNTPGWVKGVGYSVLVDMLKYICPTHVVKLSISSENKNLPAGQ 190
C DK E I++PLIVNTPGWVKGVGY VLVDMLKYICPTHVVK+SISSE KNLPAG+
Sbjct: 121 CISDKGEYPHKIEVPLIVNTPGWVKGVGYDVLVDMLKYICPTHVVKISISSEKKNLPAGE 180
Query: 191 FWLDGEHNGTINLIEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQCFPSDSDISTIK 250
FW DGEH+ TIN+IEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQCF S+S+ISTIK
Sbjct: 181 FWSDGEHDETINIIEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQCFSSESNISTIK 240
Query: 251 ELAHSLASHCPYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAVDSEGPENLPWCLGL 310
ELAH+L SHCPYEVPIASIKI+HLH EVPSSE+FYSLNA++VGLAVDS+GPENLPWCLGL
Sbjct: 241 ELAHALTSHCPYEVPIASIKIRHLHCEVPSSEIFYSLNATVVGLAVDSDGPENLPWCLGL 300
Query: 311 GIVRGIDTIKGVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVQG 356
GIVRGID++KGVLYVITPVP+SSL+KVNLLLQGYIQIP CLLQ +
Sbjct: 301 GIVRGIDSVKGVLYVITPVPNSSLEKVNLLLQGYIQIPSCLLQARN 346
>Glyma06g19970.1
Length = 340
Score = 578 bits (1489), Expect = e-165, Method: Compositional matrix adjust.
Identities = 280/346 (80%), Positives = 308/346 (89%), Gaps = 7/346 (2%)
Query: 11 IPEQWSEAAGSIADSSTPPITLICGAKNGGKTIFSRYLLNVLLHRYSRVAYLDTDVGQPE 70
IPEQW EA SIA+SS PPITLICGAKN KT FSRYLLNVLL++Y++VAYLDTDVGQPE
Sbjct: 1 IPEQWLEATESIANSSMPPITLICGAKNCAKTTFSRYLLNVLLNKYTKVAYLDTDVGQPE 60
Query: 71 FTAPAFLSLTIVHQETPDITIPCLKTPERCLFFGDVSSKRDPTSYLNYVFAIYDYYRKEY 130
FT PAFLSLTIVH+ T D+T+PCLKTPERCLFFGDVS KRDP++YL+YVFAIY+YYRKEY
Sbjct: 61 FTPPAFLSLTIVHKVTSDLTVPCLKTPERCLFFGDVSCKRDPSTYLSYVFAIYNYYRKEY 120
Query: 131 CSLDKEENSPMIDLPLIVNTPGWVKGVGYSVLVDMLKYICPTHVVKLSISSENKNLPAGQ 190
C DK E I++PLIVNTPGWVK VDMLKYICPTHVVK+SISSE KNLPAG+
Sbjct: 121 CISDKGEYPHKIEVPLIVNTPGWVK-------VDMLKYICPTHVVKISISSEKKNLPAGE 173
Query: 191 FWLDGEHNGTINLIEINSARQDSLNRSVLVQKDARLLRDLRIMAYFRQCFPSDSDISTIK 250
FW DGEH+ TINLIEINSA QDSL RSVLVQ DARLLRDLRI+ YF+QCF SDS+ISTIK
Sbjct: 174 FWSDGEHDETINLIEINSAHQDSLTRSVLVQIDARLLRDLRILTYFKQCFSSDSNISTIK 233
Query: 251 ELAHSLASHCPYEVPIASIKIQHLHREVPSSEMFYSLNASIVGLAVDSEGPENLPWCLGL 310
ELAH+LASHCPYEVPIASIKIQHLH EVPSSE+FYSLNA++VGLAVDS GPENLPWCLGL
Sbjct: 234 ELAHALASHCPYEVPIASIKIQHLHCEVPSSEIFYSLNATVVGLAVDSHGPENLPWCLGL 293
Query: 311 GIVRGIDTIKGVLYVITPVPHSSLDKVNLLLQGYIQIPICLLQVQG 356
GIVRGIDT+KGVLYVITPVPHSSL++VNLLLQGYIQIP CLLQ +
Sbjct: 294 GIVRGIDTVKGVLYVITPVPHSSLERVNLLLQGYIQIPSCLLQARN 339
>Glyma19g00340.1
Length = 196
Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 141/196 (71%), Positives = 160/196 (81%), Gaps = 17/196 (8%)
Query: 168 YICPTHVVKLSISSENKNLPAGQFWLDGEHNGTINLIEINSARQDSLNR--SVLVQKDAR 225
Y PTHVVK+SIS +H+ TINLIEINSA Q+SLNR VLVQKDAR
Sbjct: 15 YFSPTHVVKISIS---------------KHDETINLIEINSAHQNSLNRCNGVLVQKDAR 59
Query: 226 LLRDLRIMAYFRQCFPSDSDISTIKELAHSLASHCPYEVPIASIKIQHLHREVPSSEMFY 285
LLRDLRIMAYF+QCF SDS+ISTIKELAH+LASHCPYEVPIASIKI+HLH EVPSSE+F+
Sbjct: 60 LLRDLRIMAYFKQCFSSDSNISTIKELAHALASHCPYEVPIASIKIRHLHCEVPSSEIFF 119
Query: 286 SLNASIVGLAVDSEGPENLPWCLGLGIVRGIDTIKGVLYVITPVPHSSLDKVNLLLQGYI 345
SLNA+IVGLAVDSEGPENLP CLGLGIVRGID +K +LYVITPVPH+SL+KVN+LLQGYI
Sbjct: 120 SLNATIVGLAVDSEGPENLPSCLGLGIVRGIDIVKAMLYVITPVPHNSLEKVNVLLQGYI 179
Query: 346 QIPICLLQVQGCISPY 361
QIP + C+ +
Sbjct: 180 QIPSSAIHNTRCLKNF 195
>Glyma03g16380.1
Length = 105
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 70/151 (46%), Gaps = 48/151 (31%)
Query: 111 DPTSYLNYVFAIYDYYRKEYCSLDKEENSPMIDLPLIVNTPGWVKGVGYSVLVDMLKYIC 170
+P++ L+YVFAIY+YYRKEYC DK E I++PLI+NTPGWVK S V L
Sbjct: 1 EPSTCLSYVFAIYNYYRKEYCISDKGEYPHKIEVPLIMNTPGWVKRKLNSFSVVSLILFN 60
Query: 171 PTHVVKLSISSENKNLPAGQFWLDGEHNGTINLIEINSARQDSLNRSVLVQKDARLLRDL 230
PT V+ L+ +N +N LV
Sbjct: 61 PTFVL---------------------------LLHVNYFFSKMINICHLV---------- 83
Query: 231 RIMAYFRQCFPSDSDISTIKELAHSLASHCP 261
DS+ISTIKELA +LASHCP
Sbjct: 84 -----------CDSNISTIKELAQALASHCP 103
>Glyma10g43930.1
Length = 432
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 25 SSTPPITLICGAKNGGKTIFSRYLLNVLLHRYSRVAYLDTDVGQPEFTAPAFLSLTIVHQ 84
SS P ++ G + GK+ SR LL+ + + ++D D+GQ T P ++ T +
Sbjct: 117 SSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPIEM 176
Query: 85 ETPDITIPCLKTPERCLFFGDVSSKRDPTSYLNYVFAIYDYYRKEYCSLDKEENSPMIDL 144
+ L+ P F+G + + Y V + +++ + S M
Sbjct: 177 PIDPVEGIPLEMP-LVYFYGHATPSNNVELYKVLVKELAGMIERQFTGNAESRASGM--- 232
Query: 145 PLIVNTPGWVKGVGYSVLVDMLK 167
++NT GW++GVGY +L+ ++
Sbjct: 233 --VINTMGWIEGVGYDLLLHAIR 253
>Glyma20g38670.1
Length = 438
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 25 SSTPPITLICGAKNGGKTIFSRYLLNVLLHRYSRVAYLDTDVGQPEFTAPAFLSLTIVHQ 84
SS P ++ G + GK+ SR LL+ + + ++D D+GQ T P ++ T +
Sbjct: 123 SSQGPRVIVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCIAATPIEM 182
Query: 85 ETPDITIPCLKTPERCLFFGDVSSKRDPTSYLNYVFAIYDYYRKEYCSLDKEENSPMIDL 144
+ L+ P ++G + + Y V + +++ + S M
Sbjct: 183 PIDPVEGIPLEMP-LVYYYGHATPSNNVELYKVLVKELAGMIERQFTGNAESRASGM--- 238
Query: 145 PLIVNTPGWVKGVGYSVLVDMLK 167
++NT GW++GVGY +L+ ++
Sbjct: 239 --VINTMGWIEGVGYDLLLHAIR 259