Miyakogusa Predicted Gene

Lj1g3v0415990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0415990.1 tr|Q952Q7|Q952Q7_SOLLC Succinate dehydrogenase
subunit 4 (Fragment) OS=Solanum lycopersicum GN=sdh4
,45.68,0.000000000006,seg,NULL; no description,NULL,CUFF.25866.1
         (80 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g34830.1                                                        90   7e-19

>Glyma04g34830.1 
          Length = 215

 Score = 89.7 bits (221), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 51/79 (64%)

Query: 2   SKREQXXXXXXXXXXXXXXXXXXXXXVANCFVFWHTHAGIEEILADYVHHEVTREFVSIS 61
           +KREQ                      AN FVFWH +AGI EILADYVHHE+TREFV IS
Sbjct: 137 TKREQLLKATAVASLLLIYPNTYSLLFANFFVFWHLYAGIGEILADYVHHEMTREFVMIS 196

Query: 62  LRLFLIIAMKDVFLNLIFV 80
           LRLFLIIA+KDV LN +FV
Sbjct: 197 LRLFLIIALKDVCLNFVFV 215