Miyakogusa Predicted Gene
- Lj1g3v0415900.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0415900.1 tr|A9SXC9|A9SXC9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_231478,42,0.00008,E2F_TDP,Transcription factor
E2F/dimerisation partner (TDP); "Winged helix" DNA-binding
domain,NULL;,CUFF.25793.1
(372 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma17g10130.1 479 e-135
Glyma17g10130.2 436 e-122
Glyma05g01760.1 415 e-116
Glyma04g34870.1 350 1e-96
Glyma04g34870.2 310 2e-84
Glyma06g19840.1 265 4e-71
Glyma12g09860.1 65 1e-10
Glyma10g09410.1 62 7e-10
Glyma02g35850.1 62 7e-10
Glyma04g02720.2 60 5e-09
Glyma04g02720.1 60 5e-09
Glyma11g18400.1 58 1e-08
Glyma06g02740.1 58 2e-08
Glyma02g35850.2 49 7e-06
>Glyma17g10130.1
Length = 380
Score = 479 bits (1234), Expect = e-135, Method: Compositional matrix adjust.
Identities = 248/373 (66%), Positives = 303/373 (81%), Gaps = 15/373 (4%)
Query: 9 RHHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGML 68
RH+TYNRKQKSLGLLCTNFLSLYN++ +HLIGLDDA +RLGVERRRIYDIVNVLES+G+L
Sbjct: 10 RHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRLGVERRRIYDIVNVLESIGVL 69
Query: 69 ARKAKNQYTWKGFAVIPEALRELKDEGLKE--NLFDAANDSAKVSDDEYDEE--ANP-AT 123
+RKAKNQYTW+GFA IP L++LK+EGLKE N + KVSDDE DEE +NP AT
Sbjct: 70 SRKAKNQYTWRGFAAIPLTLQDLKEEGLKENSNSLRGPGNHDKVSDDEDDEETQSNPAAT 129
Query: 124 GSQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLDDAAKLLLGNV 183
GSQ+DK N +S TL K +NENR+EKSL LLTQNFVKLFVCSN++++SLD+AAKLLLG+
Sbjct: 130 GSQSDKLNPNS-TLPKPLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDA 188
Query: 184 -DTAMMRTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRSESGNSAQDPN 242
+T++MRTKVRRLYDIANVLSS+NLIEKTH ++RKPAFRWLG +GKT E+ + + N
Sbjct: 189 HNTSVMRTKVRRLYDIANVLSSMNLIEKTHTMDTRKPAFRWLGSEGKTWDETLHKS---N 245
Query: 243 TNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQSEKSNSKQDA 302
N+SRKR FGSDITNISF+RNKV+LF + GD N + + +N + G+++++N KQ
Sbjct: 246 LNDSRKRAFGSDITNISFERNKVELFTS-GDLNPNPK-KPRMENGSGLGEADENNLKQGI 303
Query: 303 KQTTGCYQFGPFAP---RKVGASENDNVKQVHDWESLAKAHRPQYENLALRDLFSHYTEA 359
KQ + Y+FGPFAP KVGAS+N+N+KQVHDW SLA AH PQY+N ALR+LFSHY EA
Sbjct: 304 KQASKSYEFGPFAPACVPKVGASQNNNMKQVHDWGSLATAHSPQYQNEALRELFSHYMEA 363
Query: 360 WKSWYSEVAGKRP 372
WK WYSE+A KRP
Sbjct: 364 WKLWYSEIARKRP 376
>Glyma17g10130.2
Length = 354
Score = 436 bits (1120), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/347 (65%), Positives = 281/347 (80%), Gaps = 15/347 (4%)
Query: 9 RHHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGML 68
RH+TYNRKQKSLGLLCTNFLSLYN++ +HLIGLDDA +RLGVERRRIYDIVNVLES+G+L
Sbjct: 10 RHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRLGVERRRIYDIVNVLESIGVL 69
Query: 69 ARKAKNQYTWKGFAVIPEALRELKDEGLKE--NLFDAANDSAKVSDDEYDEE--ANP-AT 123
+RKAKNQYTW+GFA IP L++LK+EGLKE N + KVSDDE DEE +NP AT
Sbjct: 70 SRKAKNQYTWRGFAAIPLTLQDLKEEGLKENSNSLRGPGNHDKVSDDEDDEETQSNPAAT 129
Query: 124 GSQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLDDAAKLLLGNV 183
GSQ+DK N +S TL K +NENR+EKSL LLTQNFVKLFVCSN++++SLD+AAKLLLG+
Sbjct: 130 GSQSDKLNPNS-TLPKPLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDA 188
Query: 184 -DTAMMRTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRSESGNSAQDPN 242
+T++MRTKVRRLYDIANVLSS+NLIEKTH ++RKPAFRWLG +GKT E+ + + N
Sbjct: 189 HNTSVMRTKVRRLYDIANVLSSMNLIEKTHTMDTRKPAFRWLGSEGKTWDETLHKS---N 245
Query: 243 TNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQSEKSNSKQDA 302
N+SRKR FGSDITNISF+RNKV+LF + GD N + + +N + G+++++N KQ
Sbjct: 246 LNDSRKRAFGSDITNISFERNKVELFTS-GDLNPNPK-KPRMENGSGLGEADENNLKQGI 303
Query: 303 KQTTGCYQFGPFAP---RKVGASENDNVKQVHDWESLAKAHRPQYEN 346
KQ + Y+FGPFAP KVGAS+N+N+KQVHDW SLA AH PQY+N
Sbjct: 304 KQASKSYEFGPFAPACVPKVGASQNNNMKQVHDWGSLATAHSPQYQN 350
>Glyma05g01760.1
Length = 403
Score = 415 bits (1066), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/413 (55%), Positives = 281/413 (68%), Gaps = 74/413 (17%)
Query: 9 RHHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGML 68
RH TYNRKQKSLGLLCTNFLSLY++ +HLIGLDDA RLGVERRRIYDIVNVLES+G+L
Sbjct: 10 RHCTYNRKQKSLGLLCTNFLSLYDRGSVHLIGLDDAAIRLGVERRRIYDIVNVLESIGLL 69
Query: 69 ARKAKNQYTWKGFAVIPEALRELKDEGLKEN---LFDAANDSAKVSDDEYDEE--ANPAT 123
+RKAKNQY W+GF IP L+ELK+EGLK+N L + ND+ KVSDDE DEE +NPAT
Sbjct: 70 SRKAKNQYIWRGFVAIPHTLQELKEEGLKDNSNFLRGSGNDNDKVSDDEDDEETLSNPAT 129
Query: 124 GSQNDKSNSDSATLVKSSQNEN-----------------------------RKEKSLTLL 154
GSQ+DK N +S+TL KS +N N + SL L
Sbjct: 130 GSQSDKLNPNSSTLTKSLKNGNFSLLLAISIIIIIIIIIIWKSLVKKIANLKCGLSLLLA 189
Query: 155 TQNFVK---------LFVCSN---IQMVSLDDAAKLLLGNV-DTAMMRTKVRRLYDIANV 201
+ V L +C ++++SLD+AAKLLLG+ +T++MRTKVRRLYDIANV
Sbjct: 190 AEPTVAFWLKIEGKNLLLCLPRILVELISLDEAAKLLLGDAHNTSVMRTKVRRLYDIANV 249
Query: 202 LSSINLIEKTHMAESRKPAFRWLGLKGKTRSESGNSAQDPNTNESRKRLFGSDITNISFK 261
LSS+NLIEKTH ++RKPAFRWLG +GKT +E+ N NESRKR FGSDITNISF+
Sbjct: 250 LSSMNLIEKTHTTDTRKPAFRWLGSEGKTWNET---LHKSNLNESRKRAFGSDITNISFE 306
Query: 262 RNKVDLFMNEGDFYKNSNMENKHDNLNCQGQSEKSNSKQDAKQTTGCYQFGPFAPR---K 318
RN V+ + GQ++++N KQ KQ + YQFGPFAP K
Sbjct: 307 RNNVEFGL---------------------GQADENNLKQGTKQASKNYQFGPFAPACVPK 345
Query: 319 VGASENDNVKQVHDWESLAKAHRPQYENLALRDLFSHYTEAWKSWYSEVAGKR 371
VGASEN+N+KQVH W+SLA A+ PQY+N ALR+L+SHY EAWKSWYSE+AGKR
Sbjct: 346 VGASENNNLKQVHGWDSLATANSPQYQNEALRELYSHYMEAWKSWYSEIAGKR 398
>Glyma04g34870.1
Length = 340
Score = 350 bits (899), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 202/371 (54%), Positives = 243/371 (65%), Gaps = 52/371 (14%)
Query: 10 HHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACS---------RLGVERRRIYDIVN 60
HHTY+RKQKSLGLLCT LS + C+ R + I D +
Sbjct: 7 HHTYSRKQKSLGLLCTKSLSFLLFLFFEFVQ-QGRCAINRFLFYLLRHDYVKYAISDWIA 65
Query: 61 VLESVGMLARKAKNQYTWKGFAVIPEALRELKDEGLKENLFDAANDSAKVSDDEYDEEAN 120
+ +LARKAKNQ TWKGF+ I AL+ELKDEGLKEN
Sbjct: 66 HMLCSHVLARKAKNQCTWKGFSAIHVALQELKDEGLKEN--------------------- 104
Query: 121 PATGSQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLDDAAKLLL 180
GS +D + S + L R+EKSL LLTQNFVKLFVCSN +M+SLD+AAKLLL
Sbjct: 105 --PGSSDDSNPSINLVLTVLG----RREKSLALLTQNFVKLFVCSNFEMISLDEAAKLLL 158
Query: 181 GNVDTAMMRTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRSESGNSAQD 240
GN + RTKVRRLYDIANVLSS+NLIEKTH +RKPAFRWLG++GKT SES +
Sbjct: 159 GNANN---RTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGVRGKTWSESAQT--- 212
Query: 241 PNTNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQSEKSNSKQ 300
N ES+KR+FGSDITNI+FKR KVDL M+ +F +N+ +N++ + Q EK + K+
Sbjct: 213 -NVKESQKRMFGSDITNINFKR-KVDLSMDGQNF----KTQNQQENISPRAQLEKKSLKK 266
Query: 301 DAKQTTGCYQFGPFAP---RKVGASENDNVKQVHDWESLAKAHRPQYENLALRDLFSHYT 357
DAKQT+ YQFGPFAP KVG SEN++VKQV DWESLA+ HRPQY+N AL+DLFSHY
Sbjct: 267 DAKQTSMSYQFGPFAPAYVHKVGTSENNSVKQVQDWESLAQEHRPQYQNQALKDLFSHYM 326
Query: 358 EAWKSWYSEVA 368
EAWKSWYSE A
Sbjct: 327 EAWKSWYSEAA 337
>Glyma04g34870.2
Length = 317
Score = 310 bits (793), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 224/349 (64%), Gaps = 52/349 (14%)
Query: 10 HHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACS---------RLGVERRRIYDIVN 60
HHTY+RKQKSLGLLCT LS + C+ R + I D +
Sbjct: 7 HHTYSRKQKSLGLLCTKSLSFLLFLFFEFVQ-QGRCAINRFLFYLLRHDYVKYAISDWIA 65
Query: 61 VLESVGMLARKAKNQYTWKGFAVIPEALRELKDEGLKENLFDAANDSAKVSDDEYDEEAN 120
+ +LARKAKNQ TWKGF+ I AL+ELKDEGLKEN
Sbjct: 66 HMLCSHVLARKAKNQCTWKGFSAIHVALQELKDEGLKEN--------------------- 104
Query: 121 PATGSQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLDDAAKLLL 180
GS +D + S + L R+EKSL LLTQNFVKLFVCSN +M+SLD+AAKLLL
Sbjct: 105 --PGSSDDSNPSINLVLTVLG----RREKSLALLTQNFVKLFVCSNFEMISLDEAAKLLL 158
Query: 181 GNVDTAMMRTKVRRLYDIANVLSSINLIEKTHMAESRKPAFRWLGLKGKTRSESGNSAQD 240
GN + RTKVRRLYDIANVLSS+NLIEKTH +RKPAFRWLG++GKT SES +
Sbjct: 159 GNANN---RTKVRRLYDIANVLSSMNLIEKTHTTNTRKPAFRWLGVRGKTWSESAQT--- 212
Query: 241 PNTNESRKRLFGSDITNISFKRNKVDLFMNEGDFYKNSNMENKHDNLNCQGQSEKSNSKQ 300
N ES+KR+FGSDITNI+FKR KVDL M+ +F +N+ +N++ + Q EK + K+
Sbjct: 213 -NVKESQKRMFGSDITNINFKR-KVDLSMDGQNF----KTQNQQENISPRAQLEKKSLKK 266
Query: 301 DAKQTTGCYQFGPFAP---RKVGASENDNVKQVHDWESLAKAHRPQYEN 346
DAKQT+ YQFGPFAP KVG SEN++VKQV DWESLA+ HRPQY+N
Sbjct: 267 DAKQTSMSYQFGPFAPAYVHKVGTSENNSVKQVQDWESLAQEHRPQYQN 315
>Glyma06g19840.1
Length = 213
Score = 265 bits (678), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 137/180 (76%), Positives = 153/180 (85%), Gaps = 5/180 (2%)
Query: 10 HHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLA 69
HHTY+RKQKSLGLLCTNFLSLYNKEG+ L+GLDDA SRLGVERRRIYDIVNVLESVG+L
Sbjct: 7 HHTYSRKQKSLGLLCTNFLSLYNKEGVRLVGLDDAASRLGVERRRIYDIVNVLESVGVLT 66
Query: 70 RKAKNQYTWKGFAVIPEALRELKDEGLKENL--FDAANDSAKVSDDEYDEE---ANPATG 124
RKAKNQYTWKGF IP AL+ELKDEGLKEN FD +ND+AKVSDDE +EE N G
Sbjct: 67 RKAKNQYTWKGFCAIPAALQELKDEGLKENPGSFDDSNDNAKVSDDEEEEEETFPNINIG 126
Query: 125 SQNDKSNSDSATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSLDDAAKLLLGNVD 184
SQ++K N D VKSS+NENR+EKSL LLTQNFVKLFVCSN +M+SLD+AAKLLLGN +
Sbjct: 127 SQSEKENPDYTATVKSSKNENRREKSLALLTQNFVKLFVCSNFEMISLDEAAKLLLGNAN 186
>Glyma12g09860.1
Length = 450
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
R SLGLL F++L + ++ L+ A L V++RRIYDI NVLE +G++ +K KN
Sbjct: 131 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKN 190
Query: 75 QYTWKGFAV 83
+ WKG V
Sbjct: 191 RIQWKGLDV 199
>Glyma10g09410.1
Length = 466
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
R SLGLL F++L ++ L+ A L V++RRIYDI NVLE +G++ +K KN
Sbjct: 148 RYDSSLGLLTKKFINLVKHAEGGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 207
Query: 75 QYTWKGF 81
+ WKG
Sbjct: 208 RIHWKGI 214
>Glyma02g35850.1
Length = 468
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
R SLGLL F++L ++ L+ A L V++RRIYDI NVLE +G++ +K KN
Sbjct: 148 RYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKN 207
Query: 75 QYTWKGF 81
+ WKG
Sbjct: 208 RIHWKGI 214
>Glyma04g02720.2
Length = 343
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
R SLGLL F+SL + L+ L V++RRIYDI NVLE VG++ + +KN
Sbjct: 74 RYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKN 133
Query: 75 QYTWKGFAVIPEALRELKDE 94
WKG + REL+D+
Sbjct: 134 HIKWKGCDGL--GPRELEDQ 151
>Glyma04g02720.1
Length = 343
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
R SLGLL F+SL + L+ L V++RRIYDI NVLE VG++ + +KN
Sbjct: 74 RYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKN 133
Query: 75 QYTWKGFAVIPEALRELKDE 94
WKG + REL+D+
Sbjct: 134 HIKWKGCDGL--GPRELEDQ 151
>Glyma11g18400.1
Length = 296
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 22 LLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKNQYTWKGF 81
LL F++L + ++ L+ A L V++RRIYDI NVLE +G++ +K KN+ WKG
Sbjct: 1 LLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGL 60
Query: 82 AV 83
V
Sbjct: 61 DV 62
>Glyma06g02740.1
Length = 325
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 19/159 (11%)
Query: 15 RKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGMLARKAKN 74
R SLGLL F+SL + L+ L V++RRIYDI NVLE VG++ + +KN
Sbjct: 75 RYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKN 134
Query: 75 QYTWKGFAVIPEALRELKDEGL-KENLFDAANDSAKVSDDEYDEEANPATGSQNDKSNSD 133
WKG +GL + L D N D Y EE S+ D
Sbjct: 135 HIQWKGC------------DGLGPQELEDQVNSLKAEVDSLYAEE------SELDDCIRK 176
Query: 134 SATLVKSSQNENRKEKSLTLLTQNFVKLFVCSNIQMVSL 172
L+++ + +K L L ++ + L N +++++
Sbjct: 177 KQELLRNLEESESSQKYLFLTKEDILSLPCFQNQEIIAI 215
>Glyma02g35850.2
Length = 421
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 9 RHHTYNRKQKSLGLLCTNFLSLYNKEGIHLIGLDDACSRLGVERRRIYDIVNVLESVGML 68
++ Y R+++ + +F++L ++ L+ A L V++RRIYDI NVLE +G++
Sbjct: 104 KYKFYFREKR----MTKSFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLI 159
Query: 69 ARKAKNQYTWK 79
+K KN+ WK
Sbjct: 160 EKKLKNRIHWK 170