Miyakogusa Predicted Gene
- Lj1g3v0395790.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0395790.1 tr|A9S777|A9S777_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_181893,43.52,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.25641.1
(131 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma04g35770.1 242 6e-65
Glyma06g19240.1 237 3e-63
Glyma17g09610.1 215 9e-57
Glyma05g02330.1 215 9e-57
Glyma02g04100.1 179 5e-46
Glyma01g03550.1 179 5e-46
Glyma16g07890.1 168 2e-42
Glyma08g39260.1 146 4e-36
Glyma10g01240.1 144 2e-35
Glyma06g19240.2 142 6e-35
Glyma19g40780.1 140 5e-34
Glyma03g38170.1 106 5e-24
Glyma02g04100.2 106 7e-24
Glyma20g05280.1 55 1e-08
>Glyma04g35770.1
Length = 330
Score = 242 bits (618), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 114/131 (87%), Positives = 123/131 (93%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
MLTDCVFWF+IVPFLT +DYNL+FL V MHS+NAVFLIGDTALNCLRFPWFRIGYFCLWT
Sbjct: 200 MLTDCVFWFIIVPFLTIKDYNLNFLIVIMHSINAVFLIGDTALNCLRFPWFRIGYFCLWT 259
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYVFT 120
TY+IFQWIVH CINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFAL+MKLKH+V +
Sbjct: 260 VTYVIFQWIVHGCINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALLMKLKHHVLS 319
Query: 121 TWCPDSYQCLR 131
T PDSYQC+R
Sbjct: 320 TRYPDSYQCVR 330
>Glyma06g19240.1
Length = 344
Score = 237 bits (604), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 112/131 (85%), Positives = 122/131 (93%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
MLTDCVFWF+IVPFLT +DYNL+FL V MHS+NAVFLIGDTALNCLRFPWFRIGYFCLWT
Sbjct: 214 MLTDCVFWFIIVPFLTIKDYNLNFLIVIMHSINAVFLIGDTALNCLRFPWFRIGYFCLWT 273
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYVFT 120
TY++FQWIVHACI LWWPYPFLDLSSSYAPLWYFAVALLH+PCYGIFAL+MKLKH+V +
Sbjct: 274 ITYVLFQWIVHACIYLWWPYPFLDLSSSYAPLWYFAVALLHVPCYGIFALLMKLKHHVLS 333
Query: 121 TWCPDSYQCLR 131
T PDSYQC R
Sbjct: 334 TRYPDSYQCDR 344
>Glyma17g09610.1
Length = 360
Score = 215 bits (548), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 99/129 (76%), Positives = 114/129 (88%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
MLTDCVFWF+IVPFLT +DYN++ L + MH++NAVFL+GDTALN LRFPWFRIGYFC+WT
Sbjct: 230 MLTDCVFWFIIVPFLTIKDYNINLLIISMHTINAVFLLGDTALNSLRFPWFRIGYFCMWT 289
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYVFT 120
TY+IFQWIVHA + LWWPYPFLDLSS YAPL YF++ALLHIPCYGIFAL+MKLKH V +
Sbjct: 290 ITYVIFQWIVHAIVKLWWPYPFLDLSSPYAPLCYFSMALLHIPCYGIFALIMKLKHSVLS 349
Query: 121 TWCPDSYQC 129
T PDSY C
Sbjct: 350 TRYPDSYLC 358
>Glyma05g02330.1
Length = 350
Score = 215 bits (548), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 99/130 (76%), Positives = 115/130 (88%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
MLTDCVFWF+IVPFLT +DYN++ L + MH++NAVFLIGDTALN LRFPWFRIGYFC+WT
Sbjct: 220 MLTDCVFWFIIVPFLTIKDYNINLLIISMHTINAVFLIGDTALNSLRFPWFRIGYFCMWT 279
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYVFT 120
TY++FQWIVHA + LWWPYPFLDLSS YAPL YF++ALLHIPCYGIFAL+MKLKH V +
Sbjct: 280 ITYVLFQWIVHAIVKLWWPYPFLDLSSPYAPLCYFSMALLHIPCYGIFALIMKLKHSVLS 339
Query: 121 TWCPDSYQCL 130
T PDSY C+
Sbjct: 340 TRYPDSYLCV 349
>Glyma02g04100.1
Length = 333
Score = 179 bits (455), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 83/132 (62%), Positives = 105/132 (79%), Gaps = 1/132 (0%)
Query: 1 MLTDCVFWFVIVP-FLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLW 59
+LTD VFW V+ P +L +D++L F+ VC+HSLNA+FL+GD +LNC+RFP FR YF LW
Sbjct: 202 VLTDVVFWLVLYPTYLNTKDFHLHFMDVCLHSLNAIFLLGDASLNCMRFPVFRFAYFILW 261
Query: 60 TATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYVF 119
TA ++IFQWI+HAC++LWWPYPFLDLSS YAPLWYF V ++HIPCYG FAL+MKLKH
Sbjct: 262 TAIFVIFQWIIHACVSLWWPYPFLDLSSPYAPLWYFGVGVMHIPCYGFFALIMKLKHLWL 321
Query: 120 TTWCPDSYQCLR 131
+ P S Q +R
Sbjct: 322 SKLFPGSCQFIR 333
>Glyma01g03550.1
Length = 333
Score = 179 bits (455), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 84/132 (63%), Positives = 105/132 (79%), Gaps = 1/132 (0%)
Query: 1 MLTDCVFWFVIVP-FLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLW 59
+LTD VFW V+ P +L +D++L F+ VC+HSLNAVFL+GD +LNC+RFP FR YF LW
Sbjct: 202 VLTDVVFWLVLYPTYLNTKDFHLHFMDVCLHSLNAVFLLGDASLNCMRFPVFRFAYFILW 261
Query: 60 TATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYVF 119
TA ++IFQWI+HAC++LWWPYPFLDLSS YAPLWYF V ++HIPCYG FAL+MKLKH
Sbjct: 262 TALFVIFQWIIHACVSLWWPYPFLDLSSPYAPLWYFGVGVMHIPCYGFFALIMKLKHLWL 321
Query: 120 TTWCPDSYQCLR 131
+ P S Q +R
Sbjct: 322 SKLFPGSCQFVR 333
>Glyma16g07890.1
Length = 332
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/129 (58%), Positives = 99/129 (76%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
MLTDC++W +I PFLT RDY+ +F+TV MH+LN VFL+GD ALNCL+ WF + +F LWT
Sbjct: 204 MLTDCIYWLIIFPFLTLRDYDFNFMTVNMHTLNVVFLLGDAALNCLKIHWFGMSFFVLWT 263
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYVFT 120
+ Y+IFQW +HA I +WWPYPFLD+S +PLWY VALLHIPCYG+F L++ +K+Y +
Sbjct: 264 SLYVIFQWTIHAFIWIWWPYPFLDVSLPSSPLWYLLVALLHIPCYGLFKLIVDVKYYFLS 323
Query: 121 TWCPDSYQC 129
W P S Q
Sbjct: 324 KWFPSSCQS 332
>Glyma08g39260.1
Length = 288
Score = 146 bits (369), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 63/92 (68%), Positives = 81/92 (88%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
+LTD VFWF++ PFL ++DY++ FL CMHS+NA+FL+GDT+LNC+RFP FR YF LWT
Sbjct: 196 VLTDSVFWFILYPFLMSKDYSVDFLIFCMHSINALFLLGDTSLNCMRFPMFRFAYFVLWT 255
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPL 92
+T++IFQWI+H C++LWWPYPFLDLSSSYAPL
Sbjct: 256 STFVIFQWIIHVCVSLWWPYPFLDLSSSYAPL 287
>Glyma10g01240.1
Length = 229
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 96/127 (75%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
+LTD VFW VIVPFL+ + L+ L V MHSLNAVFL+ DTALN L FPWFR+ YF LW+
Sbjct: 99 ILTDIVFWCVIVPFLSISHFKLNMLMVSMHSLNAVFLLLDTALNNLPFPWFRLSYFVLWS 158
Query: 61 ATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYVFT 120
Y+IFQW++HA WWPYPFL+L++ +AP+WY +A++HIP YG+++L++K K+ +
Sbjct: 159 CGYIIFQWVIHAFGFTWWPYPFLELNTPWAPVWYLCLAVIHIPLYGMYSLIVKAKNTILP 218
Query: 121 TWCPDSY 127
+ P ++
Sbjct: 219 RFFPRAF 225
>Glyma06g19240.2
Length = 313
Score = 142 bits (359), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/79 (83%), Positives = 73/79 (92%)
Query: 1 MLTDCVFWFVIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWT 60
MLTDCVFWF+IVPFLT +DYNL+FL V MHS+NAVFLIGDTALNCLRFPWFRIGYFCLWT
Sbjct: 214 MLTDCVFWFIIVPFLTIKDYNLNFLIVIMHSINAVFLIGDTALNCLRFPWFRIGYFCLWT 273
Query: 61 ATYLIFQWIVHACINLWWP 79
TY++FQWIVHACI LW+
Sbjct: 274 ITYVLFQWIVHACIYLWYK 292
>Glyma19g40780.1
Length = 333
Score = 140 bits (352), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Query: 1 MLTDCVFWF--VIVPFLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCL 58
+LTD VFW VIVPFL N LS LT CMH+LNA FL+ DT+LN L FPWFR+ YF L
Sbjct: 203 ILTDIVFWVWGVIVPFLQNPHLRLSPLTGCMHALNAFFLLLDTSLNNLPFPWFRVSYFVL 262
Query: 59 WTATYLIFQWIVHACINLWWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKLKHYV 118
W+ Y+IFQW++HA WWPYPFL+L++ +AP+WY +A++H PCYG++ L+++ K+ +
Sbjct: 263 WSCGYVIFQWVIHAFGFKWWPYPFLELNNKWAPIWYLCLAVIHAPCYGVYYLIVRAKNTI 322
Query: 119 FTTWCPDSY 127
P ++
Sbjct: 323 LPRLFPQAF 331
>Glyma03g38170.1
Length = 334
Score = 106 bits (265), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 63/81 (77%)
Query: 25 LTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLWTATYLIFQWIVHACINLWWPYPFLD 84
L CMH+LNA FL+ DTALN L FPWFR+ YF LW+ Y+IFQW++HA WWPYPFL+
Sbjct: 229 LMSCMHALNAFFLLLDTALNNLPFPWFRVSYFVLWSCGYVIFQWVIHAFGFKWWPYPFLE 288
Query: 85 LSSSYAPLWYFAVALLHIPCY 105
L++ +AP+WY +A++H PC+
Sbjct: 289 LNNKWAPIWYLCLAVIHAPCH 309
>Glyma02g04100.2
Length = 279
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 47/78 (60%), Positives = 64/78 (82%), Gaps = 1/78 (1%)
Query: 1 MLTDCVFWFVIVP-FLTNRDYNLSFLTVCMHSLNAVFLIGDTALNCLRFPWFRIGYFCLW 59
+LTD VFW V+ P +L +D++L F+ VC+HSLNA+FL+GD +LNC+RFP FR YF LW
Sbjct: 202 VLTDVVFWLVLYPTYLNTKDFHLHFMDVCLHSLNAIFLLGDASLNCMRFPVFRFAYFILW 261
Query: 60 TATYLIFQWIVHACINLW 77
TA ++IFQWI+HAC++LW
Sbjct: 262 TAIFVIFQWIIHACVSLW 279
>Glyma20g05280.1
Length = 136
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 60 TATYLIFQWIVHACINL-----WWPYPFLDLSSSYAPLWYFAVALLHIPCYGIFALVMKL 114
++T L+ + C ++ WPYPFL+L++ +AP+WY +A++H PCYG++ L+++
Sbjct: 50 SSTPLVLNGTITICKHMLLFPNGWPYPFLELNNKWAPIWYLCLAVIHAPCYGVYYLIVRD 109
Query: 115 KHYVFTTWCPDSY 127
K+ + P ++
Sbjct: 110 KNTILPRLFPQAF 122