Miyakogusa Predicted Gene

Lj1g3v0318000.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0318000.2 Non Chatacterized Hit- tr|E1Z9B1|E1Z9B1_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,40.83,3e-17,TIGR00046: RNA methyltransferase, RsmE
family,Ribosomal RNA small subunit methyltransferase E;
Methy,CUFF.25518.2
         (239 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g27210.2                                                       397   e-111
Glyma20g27210.1                                                       397   e-111
Glyma10g40200.1                                                       205   3e-53

>Glyma20g27210.2 
          Length = 288

 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/242 (80%), Positives = 216/242 (89%), Gaps = 3/242 (1%)

Query: 1   MLQTLVPVTFRFVNRSWLPSLCVRAF---SSSSEYGDQSRGGLPRFFSETLPPSKGNVVR 57
           MLQTL  V  RFV+RSWL +L VRA    SSSS+YGDQSRGGLPRF+SETLPPSKG+V+R
Sbjct: 1   MLQTLGGVIPRFVSRSWLRNLTVRAMAFSSSSSDYGDQSRGGLPRFYSETLPPSKGSVIR 60

Query: 58  VQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQ 117
           VQGDEFWHMTKVLRL+ +DRVQLFNGKG LVEGCI+++DRTG+DFVAL D+  IPP NTQ
Sbjct: 61  VQGDEFWHMTKVLRLTTNDRVQLFNGKGSLVEGCIQSIDRTGLDFVALNDLISIPPQNTQ 120

Query: 118 LHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQC 177
           LHVF+GFGTLKGGRADWLVEKCTE GA+SVTPLLTE S SISENRVDRL+RVILAASKQ 
Sbjct: 121 LHVFAGFGTLKGGRADWLVEKCTEFGANSVTPLLTEHSPSISENRVDRLKRVILAASKQS 180

Query: 178 QRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDF 237
           QRLHEM+ K P++IDDL HLIAQSKL L+ATAKATPVL+AL SLEK+ SGLIIIGPEGDF
Sbjct: 181 QRLHEMVLKHPIEIDDLLHLIAQSKLSLVATAKATPVLSALASLEKETSGLIIIGPEGDF 240

Query: 238 TE 239
           TE
Sbjct: 241 TE 242


>Glyma20g27210.1 
          Length = 288

 Score =  397 bits (1021), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/242 (80%), Positives = 216/242 (89%), Gaps = 3/242 (1%)

Query: 1   MLQTLVPVTFRFVNRSWLPSLCVRAF---SSSSEYGDQSRGGLPRFFSETLPPSKGNVVR 57
           MLQTL  V  RFV+RSWL +L VRA    SSSS+YGDQSRGGLPRF+SETLPPSKG+V+R
Sbjct: 1   MLQTLGGVIPRFVSRSWLRNLTVRAMAFSSSSSDYGDQSRGGLPRFYSETLPPSKGSVIR 60

Query: 58  VQGDEFWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQ 117
           VQGDEFWHMTKVLRL+ +DRVQLFNGKG LVEGCI+++DRTG+DFVAL D+  IPP NTQ
Sbjct: 61  VQGDEFWHMTKVLRLTTNDRVQLFNGKGSLVEGCIQSIDRTGLDFVALNDLISIPPQNTQ 120

Query: 118 LHVFSGFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAASKQC 177
           LHVF+GFGTLKGGRADWLVEKCTE GA+SVTPLLTE S SISENRVDRL+RVILAASKQ 
Sbjct: 121 LHVFAGFGTLKGGRADWLVEKCTEFGANSVTPLLTEHSPSISENRVDRLKRVILAASKQS 180

Query: 178 QRLHEMIFKPPVDIDDLSHLIAQSKLPLIATAKATPVLNALTSLEKQASGLIIIGPEGDF 237
           QRLHEM+ K P++IDDL HLIAQSKL L+ATAKATPVL+AL SLEK+ SGLIIIGPEGDF
Sbjct: 181 QRLHEMVLKHPIEIDDLLHLIAQSKLSLVATAKATPVLSALASLEKETSGLIIIGPEGDF 240

Query: 238 TE 239
           TE
Sbjct: 241 TE 242


>Glyma10g40200.1 
          Length = 248

 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 112/172 (65%), Positives = 130/172 (75%), Gaps = 15/172 (8%)

Query: 11  RFVNRSWLPSLCVRA--FSSSSEYGDQSRGGLPRFFSET------LPPSKGNVVRVQGDE 62
           RFVNRSWL +L VRA   SSSS++GDQ+R  +   FS        +    G+V+RVQ DE
Sbjct: 13  RFVNRSWLRNLTVRAMALSSSSDHGDQTRVSIWNQFSVNNALFVIILVVLGSVIRVQCDE 72

Query: 63  FWHMTKVLRLSNDDRVQLFNGKGGLVEGCIRNMDRTGIDFVALTDMEIIPPPNTQLHVFS 122
           FWHMTKVLR      VQLFNGKG LVEGCI+N+DRTG+DFVAL D+  IPPPNTQLHVF+
Sbjct: 73  FWHMTKVLR------VQLFNGKGSLVEGCIQNIDRTGLDFVALNDLISIPPPNTQLHVFA 126

Query: 123 GFGTLKGGRADWLVEKCTELGASSVTPLLTERSSSISENRVDRLERVILAAS 174
           GFGTLKGGRADWL+EKCTELGA+SVTPLLTERS SIS  + D L +  L+ S
Sbjct: 127 GFGTLKGGRADWLLEKCTELGANSVTPLLTERSPSIS-CKWDYLIQGCLSCS 177