Miyakogusa Predicted Gene

Lj1g3v0294720.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0294720.2 Non Chatacterized Hit- tr|G7IJ51|G7IJ51_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,52.08,0.00000000000003,RNAse_H_YqgF: RNAse H domain protein,
YqgF family,Resolvase, holliday junction-type, YqgF-like;
Ribo,CUFF.25517.2
         (199 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma03g03920.1                                                       223   1e-58
Glyma01g33030.1                                                        67   1e-11

>Glyma03g03920.1 
          Length = 162

 Score =  223 bits (568), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 109/153 (71%), Positives = 128/153 (83%), Gaps = 12/153 (7%)

Query: 25  PKKPSFVKLCPTQNAKSHYNRVKPISLDEFPPNALRR------RGGFTLGVDLGMARTGI 78
           P  PSFV      N K+ Y RVK ++LDE PPNALR+      RGGF+LG+DLG+ARTG+
Sbjct: 16  PSNPSFV------NGKNGYCRVKALTLDELPPNALRKKREPQWRGGFSLGLDLGLARTGL 69

Query: 79  AISKGFNFRPVTVLELRGQKLEVQMINIAEQEEADEFVIGLPRSFDGKETPQSNIVRTVA 138
           A+SKGF+ RP+TVLELRGQKLEVQ+INIAE+EE DEF+IGLP+S DGKETPQSN VR+VA
Sbjct: 70  ALSKGFSIRPLTVLELRGQKLEVQIINIAEEEEVDEFIIGLPKSSDGKETPQSNKVRSVA 129

Query: 139 GRLAIRAAERGWRVYLQDEHGTTTEAVNRMVNM 171
           GRLA+RAAERGWRVYLQDEHGTT EA +RM+NM
Sbjct: 130 GRLAVRAAERGWRVYLQDEHGTTEEAKDRMINM 162


>Glyma01g33030.1 
          Length = 71

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 41/53 (77%), Gaps = 6/53 (11%)

Query: 46 VKPISLDEFPPNALRR------RGGFTLGVDLGMARTGIAISKGFNFRPVTVL 92
          VK ++LDE PPNALR+      RGGF+ G+DLG+AR G+A+SKGF  RP+TVL
Sbjct: 19 VKALTLDELPPNALRKKRQPQWRGGFSRGLDLGLARIGLALSKGFFIRPLTVL 71