Miyakogusa Predicted Gene

Lj1g3v0180960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0180960.1 tr|I3S8P2|I3S8P2_LOTJA Transcription initiation
factor IIA subunit 2 OS=Lotus japonicus PE=3
SV=1,100,1.4013e-45,Transcription factor IIA (TFIIA), alpha-helical
domain,Transcription factor IIA, helical; Transcript,CUFF.25338.1
         (89 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g38030.1                                                       186   6e-48
Glyma14g36190.2                                                       184   2e-47
Glyma14g36190.1                                                       184   2e-47

>Glyma02g38030.1 
          Length = 106

 Score =  186 bits (471), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 88/89 (98%), Positives = 89/89 (100%)

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQE 89
          GHLHTYRFCDNVWTFILQDALFKNED+QE
Sbjct: 61 GHLHTYRFCDNVWTFILQDALFKNEDSQE 89


>Glyma14g36190.2 
          Length = 106

 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/89 (97%), Positives = 89/89 (100%)

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQE 89
          GHLHTYRFCDNVWTFILQDALFK+ED+QE
Sbjct: 61 GHLHTYRFCDNVWTFILQDALFKSEDSQE 89


>Glyma14g36190.1 
          Length = 106

 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/89 (97%), Positives = 89/89 (100%)

Query: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60
          MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK
Sbjct: 1  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALETQVKSKVSIK 60

Query: 61 GHLHTYRFCDNVWTFILQDALFKNEDNQE 89
          GHLHTYRFCDNVWTFILQDALFK+ED+QE
Sbjct: 61 GHLHTYRFCDNVWTFILQDALFKSEDSQE 89