Miyakogusa Predicted Gene

Lj1g3v0129780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0129780.1 Non Chatacterized Hit- tr|K4DDC0|K4DDC0_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,63.01,4e-18,PARG_cat,Poly(ADP-ribose)
glycohydrolase,NODE_57825_length_377_cov_35.822281.path1.1
         (73 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g01250.1                                                       127   3e-30
Glyma11g01250.2                                                       127   4e-30
Glyma14g00950.1                                                        59   2e-09

>Glyma11g01250.1 
          Length = 786

 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 66/73 (90%)

Query: 1   MPQGVVSFERKVLPLEDDYIHISYPNADVWSTSIIPLCRFEVHSSGLIEDQLSEAVEVDF 60
           MP+G+VSFERKVLP ++D IHISYP+A+ WSTS IPLCRFEVHSSGLIEDQ S AVEVDF
Sbjct: 210 MPKGIVSFERKVLPFKNDSIHISYPDANFWSTSAIPLCRFEVHSSGLIEDQSSGAVEVDF 269

Query: 61  ANEYLGGGALRRG 73
           AN+YLGGGAL RG
Sbjct: 270 ANKYLGGGALGRG 282


>Glyma11g01250.2 
          Length = 547

 Score =  127 bits (318), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/73 (80%), Positives = 66/73 (90%)

Query: 1   MPQGVVSFERKVLPLEDDYIHISYPNADVWSTSIIPLCRFEVHSSGLIEDQLSEAVEVDF 60
           MP+G+VSFERKVLP ++D IHISYP+A+ WSTS IPLCRFEVHSSGLIEDQ S AVEVDF
Sbjct: 210 MPKGIVSFERKVLPFKNDSIHISYPDANFWSTSAIPLCRFEVHSSGLIEDQSSGAVEVDF 269

Query: 61  ANEYLGGGALRRG 73
           AN+YLGGGAL RG
Sbjct: 270 ANKYLGGGALGRG 282


>Glyma14g00950.1 
          Length = 139

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 3  QGVVSFERKVLPLEDDYIHISYPNADVWSTSIIPLCRFEVHSSGLIEDQLSEAVEVDFAN 62
           G+VSFER+V P ++ Y +I +P A++W  S  PLC   + +SG +E+Q S AVEV FAN
Sbjct: 31 NGIVSFERRVFPYKN-YSNIGHPEAELWGASRTPLCNVLLLNSGHMENQSSVAVEVYFAN 89