Miyakogusa Predicted Gene

Lj1g3v0129720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0129720.1 tr|Q0ZCE0|Q0ZCE0_POPTR Poly(ADP-ribose)
glycohydrolase OS=Populus trichocarpa PE=2
SV=1,36.09,1e-17,POLY(ADP-RIBOSE) GLYCOHYDROLASE,Poly(ADP-ribose)
glycohydrolase; PARG_cat,Poly(ADP-ribose)
glycohydr,NODE_83911_length_764_cov_33.859947.path1.1
         (184 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g01250.2                                                       301   3e-82
Glyma11g01250.1                                                       283   8e-77
Glyma11g01260.1                                                       106   2e-23

>Glyma11g01250.2 
          Length = 547

 Score =  301 bits (770), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 145/184 (78%), Positives = 157/184 (85%), Gaps = 1/184 (0%)

Query: 1   MRQYRPEFLLREINKAFCGFLYGSKHQLYQKILQEKGCPSTLFDAATSTPMETSEGKCSN 60
           MRQYR  FLLREINKAFCGFLY  K+Q YQKILQE GC S LF AATST MET EG+ SN
Sbjct: 363 MRQYRANFLLREINKAFCGFLYQCKYQPYQKILQENGCTSALFYAATSTSMETDEGEISN 422

Query: 61  HEIRDSQNDYHRMEQCNNIGVATGNWGCGAFGGDPEVKTIIQWLAASQALRPFIAYYRFR 120
           H+I +SQNDYH M+Q NNIGVATGNWGCGAFGGDPEVKTIIQWLAASQALRPFIAYY F 
Sbjct: 423 HKITNSQNDYHGMDQGNNIGVATGNWGCGAFGGDPEVKTIIQWLAASQALRPFIAYYTFG 482

Query: 121 LEALHNIDKVAHWILSHRWTVGDLWNMLTEYSMNRSKGGTNVGFLQWVLPSMYD-DAGMD 179
           LEAL ++D+VAHWILS RWTVGDLWNML EYS+NRSKG TNVGFLQW+LPS+Y   A MD
Sbjct: 483 LEALQSLDEVAHWILSQRWTVGDLWNMLIEYSINRSKGETNVGFLQWLLPSIYGHGARMD 542

Query: 180 FSNI 183
             N+
Sbjct: 543 LPNL 546


>Glyma11g01250.1 
          Length = 786

 Score =  283 bits (724), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 136/173 (78%), Positives = 148/173 (85%), Gaps = 1/173 (0%)

Query: 12  EINKAFCGFLYGSKHQLYQKILQEKGCPSTLFDAATSTPMETSEGKCSNHEIRDSQNDYH 71
           EINKAFCGFLY  K+Q YQKILQE GC S LF AATST MET EG+ SNH+I +SQNDYH
Sbjct: 613 EINKAFCGFLYQCKYQPYQKILQENGCTSALFYAATSTSMETDEGEISNHKITNSQNDYH 672

Query: 72  RMEQCNNIGVATGNWGCGAFGGDPEVKTIIQWLAASQALRPFIAYYRFRLEALHNIDKVA 131
            M+Q NNIGVATGNWGCGAFGGDPEVKTIIQWLAASQALRPFIAYY F LEAL ++D+VA
Sbjct: 673 GMDQGNNIGVATGNWGCGAFGGDPEVKTIIQWLAASQALRPFIAYYTFGLEALQSLDEVA 732

Query: 132 HWILSHRWTVGDLWNMLTEYSMNRSKGGTNVGFLQWVLPSMYD-DAGMDFSNI 183
           HWILS RWTVGDLWNML EYS+NRSKG TNVGFLQW+LPS+Y   A MD  N+
Sbjct: 733 HWILSQRWTVGDLWNMLIEYSINRSKGETNVGFLQWLLPSIYGHGARMDLPNL 785


>Glyma11g01260.1 
          Length = 321

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/157 (42%), Positives = 86/157 (54%), Gaps = 23/157 (14%)

Query: 31  KILQEKGCPSTLFDAATS---TPMETSEGKCSNHEIRDSQND--YHRMEQCNNIGVATGN 85
           K +  + CP   F    S     +E      S  E+R  ++   +   +Q NNIG ATGN
Sbjct: 166 KSIHGRFCPPACFTCMRSLHSCKVEMFLFLNSLEELRPIRHSVVFCSKDQGNNIGYATGN 225

Query: 86  WGCGAFGGDPEVKTIIQWLAASQALRPFIAYYRFRLEALHNIDKVA-------------- 131
           WGCG FG DPE+KTIIQWLAASQ+ RPF+A Y   L  L+N+DK+               
Sbjct: 226 WGCGVFGRDPEIKTIIQWLAASQSQRPFVACY--TLGKLNNLDKILDPRYMAFHIGICIE 283

Query: 132 HWILSHRWTVGDLWNMLTEYSMNRSKGGTNVGFLQWV 168
             IL  R+  GD+W  L EYS+ +S+G  NVGF QW+
Sbjct: 284 SVILLGRF--GDVWKNLIEYSIIKSRGEINVGFFQWL 318