Miyakogusa Predicted Gene

Lj1g3v0051020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0051020.1 Non Chatacterized Hit- tr|G4LW35|G4LW35_SCHMA
Histone deacetylase,putative OS=Schistosoma mansoni
GN,44.23,5e-19,Ubiquitin Carboxyl-terminal Hydrolase-like z,Zinc
finger, UBP-type; seg,NULL; ZF_UBP,Zinc finger, UB,CUFF.25127.1
         (149 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g45400.1                                                       182   1e-46
Glyma01g45400.2                                                       181   3e-46

>Glyma01g45400.1 
          Length = 140

 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/114 (79%), Positives = 99/114 (86%), Gaps = 3/114 (2%)

Query: 25  WVDARTCCDHLAS-LSLDLTHIPIPNTPCNRCQHPTENWLCLSCKDVLCSRFVNKHMLHH 83
           WVDAR+ CDHLAS LS DL  IP P+TPC  CQHPTENWLCLSCK VLCSRFVNKHMLHH
Sbjct: 22  WVDARSWCDHLASSLSEDLGQIPGPDTPCQTCQHPTENWLCLSCKQVLCSRFVNKHMLHH 81

Query: 84  FQDTN--HSVALSFSDLSVWCFSCDAYLDAQLIAQLRPVYQLAYLLKFGEPPPL 135
            +DTN  H VALSFSDLSVWCFSCDAYLD QLI QLRP++QLAY+LKFG+PPP+
Sbjct: 82  SRDTNLTHCVALSFSDLSVWCFSCDAYLDPQLIPQLRPLHQLAYILKFGQPPPI 135


>Glyma01g45400.2 
          Length = 134

 Score =  181 bits (459), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/114 (79%), Positives = 99/114 (86%), Gaps = 3/114 (2%)

Query: 25  WVDARTCCDHLAS-LSLDLTHIPIPNTPCNRCQHPTENWLCLSCKDVLCSRFVNKHMLHH 83
           WVDAR+ CDHLAS LS DL  IP P+TPC  CQHPTENWLCLSCK VLCSRFVNKHMLHH
Sbjct: 16  WVDARSWCDHLASSLSEDLGQIPGPDTPCQTCQHPTENWLCLSCKQVLCSRFVNKHMLHH 75

Query: 84  FQDTN--HSVALSFSDLSVWCFSCDAYLDAQLIAQLRPVYQLAYLLKFGEPPPL 135
            +DTN  H VALSFSDLSVWCFSCDAYLD QLI QLRP++QLAY+LKFG+PPP+
Sbjct: 76  SRDTNLTHCVALSFSDLSVWCFSCDAYLDPQLIPQLRPLHQLAYILKFGQPPPI 129