Miyakogusa Predicted Gene
- Lj1g3v0050930.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0050930.1 Non Chatacterized Hit- tr|J3LT23|J3LT23_ORYBR
Uncharacterized protein (Fragment) OS=Oryza brachyanth,56.96,3e-19,no
description,NULL; SWIB/MDM2 domain,SWIB/MDM2 domain; SWIB,SWIB/MDM2
domain; SWI complex, BAF60b d,CUFF.25123.1
(132 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma11g00300.2 150 3e-37
Glyma11g00300.1 150 3e-37
Glyma01g45430.1 150 3e-37
Glyma11g09580.1 99 2e-21
Glyma01g35780.1 98 2e-21
Glyma08g43590.2 75 2e-14
Glyma08g43590.1 75 2e-14
Glyma11g06240.1 74 5e-14
Glyma17g01230.1 72 2e-13
Glyma07g39530.1 70 5e-13
Glyma08g43410.1 69 9e-13
Glyma01g39030.1 68 2e-12
Glyma01g39030.2 68 2e-12
Glyma18g10140.1 68 3e-12
Glyma19g25800.1 51 4e-07
Glyma01g35780.2 48 2e-06
Glyma01g37400.1 48 3e-06
Glyma05g03290.1 48 3e-06
Glyma19g18360.1 48 3e-06
Glyma19g18360.2 47 4e-06
Glyma05g14470.1 47 5e-06
Glyma11g07890.1 46 8e-06
>Glyma11g00300.2
Length = 118
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/104 (69%), Positives = 84/104 (80%), Gaps = 1/104 (0%)
Query: 30 LRMVRPV-VTSATVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIK 88
LRM+R +T T+SQ S KIRGIMKPRK+SPEM+ + G PE++RTQ LK IWAYIK
Sbjct: 10 LRMMRTSRITCCTLSQSSKPARKIRGIMKPRKVSPEMEDLVGAPEMARTQVLKRIWAYIK 69
Query: 89 ENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFLK 132
+NNLQDP +K+ I CDEKLKKVFAGKD+V MLEIA LISPHFLK
Sbjct: 70 DNNLQDPTDKRTINCDEKLKKVFAGKDQVEMLEIARLISPHFLK 113
>Glyma11g00300.1
Length = 148
Score = 150 bits (379), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 89/115 (77%), Gaps = 3/115 (2%)
Query: 21 SFALPPPPT--LRMVRPV-VTSATVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRT 77
+F + P + LRM+R +T T+SQ S KIRGIMKPRK+SPEM+ + G PE++RT
Sbjct: 29 TFMMRPSASSGLRMMRTSRITCCTLSQSSKPARKIRGIMKPRKVSPEMEDLVGAPEMART 88
Query: 78 QALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFLK 132
Q LK IWAYIK+NNLQDP +K+ I CDEKLKKVFAGKD+V MLEIA LISPHFLK
Sbjct: 89 QVLKRIWAYIKDNNLQDPTDKRTINCDEKLKKVFAGKDQVEMLEIARLISPHFLK 143
>Glyma01g45430.1
Length = 158
Score = 150 bits (379), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 87/122 (71%), Gaps = 10/122 (8%)
Query: 21 SFALPPPPTLRMVRP----------VVTSATVSQPSAAGNKIRGIMKPRKISPEMQSICG 70
S LPPP T +R V+ TVSQ S KIRGIMKPRK+SPEM+ + G
Sbjct: 32 SRVLPPPETHTFMRTRPSSAALRTISVSCCTVSQSSKPARKIRGIMKPRKVSPEMEDLVG 91
Query: 71 VPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHF 130
PE++RTQ LK IWAYIK+NNLQDP +K+ I CDEKLKKVFAGKD+V MLEIA LISPHF
Sbjct: 92 APEMARTQVLKRIWAYIKDNNLQDPTDKRTINCDEKLKKVFAGKDQVEMLEIARLISPHF 151
Query: 131 LK 132
LK
Sbjct: 152 LK 153
>Glyma11g09580.1
Length = 132
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 56/79 (70%)
Query: 54 GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAG 113
GI K +S E+ G P++SRT A+K +WAYIK NLQ+P NKK I CDEKLK +F G
Sbjct: 52 GIQKVVPVSSELGDFLGAPQVSRTDAVKKVWAYIKLQNLQNPANKKEIFCDEKLKTIFEG 111
Query: 114 KDEVGMLEIAGLISPHFLK 132
KD+VG EIA L+S HF+K
Sbjct: 112 KDKVGFTEIAKLLSSHFVK 130
>Glyma01g35780.1
Length = 132
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 57/79 (72%)
Query: 54 GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAG 113
GI K +S E+ G P++SRT+A+K +WAYIK NLQ+P NKK I CDEKLK +F G
Sbjct: 52 GIQKVVPVSSELGDFLGAPQVSRTEAVKKVWAYIKLQNLQNPANKKEIFCDEKLKTIFEG 111
Query: 114 KDEVGMLEIAGLISPHFLK 132
KD+VG EIA L+S HF+K
Sbjct: 112 KDKVGFTEIAKLLSNHFVK 130
>Glyma08g43590.2
Length = 330
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 54 GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAG 113
G+ K +SPE+Q I G P +SRT+ +K +WAYI++NNLQDP NK+ I C+++L+ VF
Sbjct: 147 GLTKICGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFE- 205
Query: 114 KDEVGMLEIAGLISPHFL 131
D M ++ L+S H +
Sbjct: 206 TDCTDMFKMNKLLSKHII 223
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 61 ISPEMQSICGVP--EISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVG 118
IS + + G+ E+ +++ L+ IW YIK N L+DP N I CD KL+++F G + +
Sbjct: 255 ISDALANFFGITGREMLQSEVLRRIWEYIKVNQLEDPANPMAIVCDGKLQEIF-GCESIS 313
Query: 119 MLEIAGLISPHFL 131
L I ++ H +
Sbjct: 314 ALGIPEVLGRHHI 326
>Glyma08g43590.1
Length = 330
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 54 GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAG 113
G+ K +SPE+Q I G P +SRT+ +K +WAYI++NNLQDP NK+ I C+++L+ VF
Sbjct: 147 GLTKICGVSPELQVIVGQPALSRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFE- 205
Query: 114 KDEVGMLEIAGLISPHFL 131
D M ++ L+S H +
Sbjct: 206 TDCTDMFKMNKLLSKHII 223
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 61 ISPEMQSICGVP--EISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVG 118
IS + + G+ E+ +++ L+ IW YIK N L+DP N I CD KL+++F G + +
Sbjct: 255 ISDALANFFGITGREMLQSEVLRRIWEYIKVNQLEDPANPMAIVCDGKLQEIF-GCESIS 313
Query: 119 MLEIAGLISPHFL 131
L I ++ H +
Sbjct: 314 ALGIPEVLGRHHI 326
>Glyma11g06240.1
Length = 346
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 54 GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAG 113
G K +SP++Q G PE++RT+ +K +WAYI+E NLQDP N++ I CDE+L+ +F
Sbjct: 144 GFCKLCSLSPQLQEFMGAPEMARTEVVKQLWAYIREKNLQDPNNRRNIICDERLRSLF-N 202
Query: 114 KDEVGMLEIAGLISPH 129
+ + M ++ +S H
Sbjct: 203 VNSINMFQMNKALSKH 218
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 54 GIMKPRKISPEMQSICGV--PEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVF 111
G + P ++S + + G E++RT +K +W YIK NNLQDP +K+ I CDEKLK++F
Sbjct: 264 GFLAPLQLSDALVNFLGTGESELARTDVIKRMWDYIKGNNLQDPSDKRKIICDEKLKELF 323
Query: 112 AGKDEVGMLEIAGLISPHFLK 132
D + L++PHF+K
Sbjct: 324 -DVDTFTGFTVTKLLAPHFIK 343
>Glyma17g01230.1
Length = 329
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 35 PVVTSATVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQD 94
P V +V S G+ K +SPE+Q++ G P + RT+ ++ +WAYIK+NNLQD
Sbjct: 123 PQVPKESVQTGSKRRGGAGGLNKVCGVSPELQAVVGEPAMPRTEIVRQLWAYIKKNNLQD 182
Query: 95 PENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFL 131
P NK+ I CD+ L+ VF D M ++ L++ H +
Sbjct: 183 PGNKRKIICDDALRLVFE-TDCTDMFKMNQLLAKHII 218
>Glyma07g39530.1
Length = 332
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 7/82 (8%)
Query: 50 NKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKK 109
NK+ G+ SPE+Q++ G P + RT+ ++ +WAYIK+NNLQDP NK+ I CD+ L+
Sbjct: 147 NKVCGV------SPELQAVVGEPAMPRTEIVRQLWAYIKKNNLQDPGNKRKIICDDALRL 200
Query: 110 VFAGKDEVGMLEIAGLISPHFL 131
VF D M ++ L++ H +
Sbjct: 201 VFE-TDCTDMFKMNQLLAKHII 221
>Glyma08g43410.1
Length = 100
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 65 MQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAG 124
++ G +ISR K IW+YIK NNLQD NK ++ CDEKLK + GK +V + E+
Sbjct: 30 LREFVGQSQISRLGCFKCIWSYIKTNNLQDQNNKNVVNCDEKLKSILLGKPQVELAELPA 89
Query: 125 LISPHF 130
LI HF
Sbjct: 90 LIKMHF 95
>Glyma01g39030.1
Length = 337
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 54 GIMKPRKISPEMQSICGV--PEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVF 111
G + P ++S + + G E++RT +K +W YIK NNLQDP +K+ I CDEKLK++F
Sbjct: 255 GFLAPLQLSDALVNFLGTGESELARTDVIKRMWDYIKGNNLQDPSDKRKIICDEKLKELF 314
Query: 112 AGKDEVGMLEIAGLISPHFLK 132
G + L++PHF+K
Sbjct: 315 DVDSFTGFT-VTKLLAPHFIK 334
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 54 GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAG 113
G K +SP++Q PE++RT+ +K +W YI+E NLQDP N++ I CDE+L+ +F
Sbjct: 135 GFCKLCSLSPQLQEFMEAPEMARTEVVKQLWVYIREKNLQDPNNRRNIICDERLRSLF-N 193
Query: 114 KDEVGMLEIAGLISPH 129
+ + M ++ +S H
Sbjct: 194 VNSINMFQMNKALSKH 209
>Glyma01g39030.2
Length = 243
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 54 GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAG 113
G K +SP++Q PE++RT+ +K +W YI+E NLQDP N++ I CDE+L+ +F
Sbjct: 135 GFCKLCSLSPQLQEFMEAPEMARTEVVKQLWVYIREKNLQDPNNRRNIICDERLRSLF-N 193
Query: 114 KDEVGMLEIAGLISPH 129
+ + M ++ +S H
Sbjct: 194 VNSINMFQMNKALSKH 209
>Glyma18g10140.1
Length = 100
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 40 ATVSQPSAAGNKIRGIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKK 99
A P N I + P ++ G +ISR K +W YIK NNLQD NK
Sbjct: 9 AITDNPKKLANLIDLVNLPS----TLREFVGQSQISRLGCFKCVWFYIKTNNLQDQNNKN 64
Query: 100 LIRCDEKLKKVFAGKDEVGMLEIAGLISPHF 130
++ CDEKLK + GK +V + E+ LI HF
Sbjct: 65 VVNCDEKLKSILLGKPQVELAELPALIKMHF 95
>Glyma19g25800.1
Length = 450
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 61 ISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGML 120
+SP ++ + GV +R + + IW Y+K LQ P + CD+ L++VF G+D+V
Sbjct: 237 LSPALREVLGVQVDTRARIVSAIWHYVKARKLQIPNDPSFFHCDQALQRVF-GEDKVKFT 295
Query: 121 EIAGLISPHFL 131
++ IS H
Sbjct: 296 MVSQKISQHLF 306
>Glyma01g35780.2
Length = 102
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 54 GIMKPRKISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLI 101
GI K +S E+ G P++SRT+A+K +WAYIK NLQ + +
Sbjct: 52 GIQKVVPVSSELGDFLGAPQVSRTEAVKKVWAYIKLQNLQQIRRRSFV 99
>Glyma01g37400.1
Length = 637
Score = 48.1 bits (113), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 86 YIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFL 131
Y +NNL+DP+ K I CD +L +F GK VG +E+ L+ PHFL
Sbjct: 271 YANKNNLRDPQQKSQIVCDSRLLNLF-GKTRVGHIEMLKLLEPHFL 315
>Glyma05g03290.1
Length = 513
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 61 ISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGML 120
+SP++ + GV SR + + +W Y+K LQ P + CD L+KVF G+D++
Sbjct: 301 VSPQLARVLGVEFDSRARIIAALWHYVKAKKLQSPNDPSFFMCDTSLQKVF-GEDKMKFS 359
Query: 121 EIAGLISPHF 130
+ IS H
Sbjct: 360 VASQKISQHL 369
>Glyma19g18360.1
Length = 543
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 60 KISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGM 119
K+SP + + G+ +R + + IW Y+K LQ+P + CD+ L KVF G++++
Sbjct: 329 KLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSYFHCDQPLLKVF-GEEKMKF 387
Query: 120 LEIAGLISPHFL 131
++ IS H
Sbjct: 388 TMVSQKISSHLF 399
>Glyma19g18360.2
Length = 418
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 60 KISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGM 119
K+SP + + G+ +R + + IW Y+K LQ+P + CD+ L KVF G++++
Sbjct: 204 KLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSYFHCDQPLLKVF-GEEKMKF 262
Query: 120 LEIAGLISPHFL 131
++ IS H
Sbjct: 263 TMVSQKISSHLF 274
>Glyma05g14470.1
Length = 418
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 60 KISPEMQSICGVPEISRTQALKHIWAYIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGM 119
K+SP + + G+ +R + + IW Y+K LQ+P + CD L+KVF G++ +
Sbjct: 204 KLSPALTEVLGIEVDTRPRIVAAIWHYVKARKLQNPNDPSYFHCDPPLQKVF-GEENMKF 262
Query: 120 LEIAGLISPHFL 131
++ IS H
Sbjct: 263 TMVSQKISSHLF 274
>Glyma11g07890.1
Length = 1218
Score = 46.2 bits (108), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 86 YIKENNLQDPENKKLIRCDEKLKKVFAGKDEVGMLEIAGLISPHFL 131
Y +NNL+DP+ K I CD +L +F GK VG +E+ L+ PHFL
Sbjct: 340 YANKNNLRDPQQKSQIVCDSRLLNLF-GKARVGHIEMLKLLEPHFL 384