Miyakogusa Predicted Gene

Lj0g3v0364439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0364439.1 Non Chatacterized Hit- tr|I1MZ94|I1MZ94_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38897
PE,97.56,9e-16,RCC1_3,Regulator of chromosome condensation, RCC1; no
description,Regulator of chromosome condensati,CUFF.25105.1
         (61 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g03870.1                                                        88   3e-18
Glyma11g34470.1                                                        86   7e-18
Glyma02g41810.1                                                        82   1e-16
Glyma18g40600.1                                                        67   6e-12
Glyma07g16400.1                                                        66   8e-12

>Glyma18g03870.1 
          Length = 472

 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/41 (97%), Positives = 41/41 (100%)

Query: 21  QLGLGDVIDRNVPSEVTIEGCVAKNVACGWWHTLLLAESPT 61
           QLGLGDVIDRN+PSEVTIEGCVAKNVACGWWHTLLLAESPT
Sbjct: 432 QLGLGDVIDRNIPSEVTIEGCVAKNVACGWWHTLLLAESPT 472


>Glyma11g34470.1 
          Length = 480

 Score = 86.3 bits (212), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 42/56 (75%), Positives = 45/56 (80%), Gaps = 6/56 (10%)

Query: 12  TDSCNFWVW------QLGLGDVIDRNVPSEVTIEGCVAKNVACGWWHTLLLAESPT 61
           TD+   + W      QLGLGDVIDRN+PSEVTIEGCVAKNVACGWWHTLLLAE PT
Sbjct: 425 TDNGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVAKNVACGWWHTLLLAEPPT 480


>Glyma02g41810.1 
          Length = 477

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/41 (92%), Positives = 39/41 (95%)

Query: 21  QLGLGDVIDRNVPSEVTIEGCVAKNVACGWWHTLLLAESPT 61
           QLGLGDVIDRN+PSEVTIEGCV KNVACGWWHTLLLAES T
Sbjct: 437 QLGLGDVIDRNIPSEVTIEGCVPKNVACGWWHTLLLAESHT 477


>Glyma18g40600.1 
          Length = 459

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 6/53 (11%)

Query: 12  TDSCNFWVW------QLGLGDVIDRNVPSEVTIEGCVAKNVACGWWHTLLLAE 58
           TD  + + W      QLGLGD +DRN+P +V+I GC  +NVACGWWHTLLL +
Sbjct: 404 TDDGHLFTWGWNKYGQLGLGDSVDRNIPGQVSIAGCRPRNVACGWWHTLLLGD 456


>Glyma07g16400.1 
          Length = 457

 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 6/53 (11%)

Query: 12  TDSCNFWVW------QLGLGDVIDRNVPSEVTIEGCVAKNVACGWWHTLLLAE 58
           TD  + + W      QLGLGD +DRN+P +V+I GC  +NVACGWWHTLL+ +
Sbjct: 402 TDDGHLFTWGWNKYGQLGLGDSVDRNIPGQVSIAGCRPRNVACGWWHTLLMGD 454