Miyakogusa Predicted Gene
- Lj0g3v0364159.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0364159.1 Non Chatacterized Hit- tr|B9RZG9|B9RZG9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,34.52,1e-16,B3,B3 DNA binding domain; no description,DNA-binding
pseudobarrel domain; DNA-binding pseudobarrel d,CUFF.25085.1
(191 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma09g20060.1 66 2e-11
Glyma20g24270.1 65 5e-11
Glyma09g18790.1 62 3e-10
Glyma11g13210.2 62 4e-10
Glyma11g13210.1 62 5e-10
Glyma12g05250.1 59 3e-09
Glyma12g05250.2 59 3e-09
Glyma16g05110.1 58 7e-09
Glyma07g21160.1 54 9e-08
Glyma20g01130.1 54 1e-07
Glyma10g42770.1 52 3e-07
Glyma18g30700.1 49 2e-06
>Glyma09g20060.1
Length = 289
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 9/70 (12%)
Query: 6 IRLERLDGRTWKVYYSFFKLGGGWKKFATDNNLKVGDICVFELTKR-EPLSLKVLIF--- 61
+ LE LDGRTW V S +L GW+KFA++NNL VGD+CVFEL ++ + L KV I+
Sbjct: 208 VILEILDGRTWSVICSATRLTEGWQKFASENNLNVGDVCVFELIQKIQGLCFKVSIYQGA 267
Query: 62 -----PVAQG 66
P++QG
Sbjct: 268 EEPICPISQG 277
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 92/230 (40%), Gaps = 55/230 (23%)
Query: 6 IRLERLDGRTWKVYYSFFKLGG------GWKKFATDNNLKVGDICVFELTKREPLSLKVL 59
+ L+ DG WK++Y+ K GG GWK+FAT +L G + FE + +
Sbjct: 47 VFLKPADGTEWKIHYT--KHGGEIWFQKGWKEFATYYSLDHGHLLFFEYEGTSHFDVHIF 104
Query: 60 IFPVAQGGVPSSLGPH----------------------------------FTNAAQREAR 85
+ PS G H T+ A ++A
Sbjct: 105 DSSALEIDYPSH-GTHEGKDNLVEISDDSVEILEDDGIGIFNTEYPKVEQSTSTALKKAS 163
Query: 86 KYTPKNPSFTVSLNPVIKPAY----RPPVPISFIREYLNEKKQIINLKI-EEKLWPVEFI 140
+ ++P F + + P Y +P F YL + I+ L+I + + W V
Sbjct: 164 TFRSEHPFFRLVMKPSFINGYYLKISQEIPPQFAERYLKKTHAIVILEILDGRTWSVIC- 222
Query: 141 YYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEVHIFKG 190
+L++GW FA E+ L GDVCVFELI K + +V I++G
Sbjct: 223 -----SATRLTEGWQKFASENNLNVGDVCVFELIQKI-QGLCFKVSIYQG 266
>Glyma20g24270.1
Length = 254
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 25/135 (18%)
Query: 70 SSLGPHFTNAAQREARKYTPKNPSFTVSLNPVIKPA---------------YRPPVPISF 114
SSL + A+ AR + NP FTV + PV Y P+P
Sbjct: 127 SSLNMPTQSRAKEVARNFISYNPFFTVFIKPVHVADGRLVGLNMKHIHTFIYSSPLPD-- 184
Query: 115 IREYLNEKKQIINLKIEEKLWPVEFIYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELI 174
++ + K++ + L++ E+ W V+ + +LS GW FA ES+L GDVCVFELI
Sbjct: 185 LKGIIENKEKYLKLQLGERSWNVKLLN------NRLSAGWTSFASESELQPGDVCVFELI 238
Query: 175 NKDEENPVLEVHIFK 189
N+ E+ V +VH+FK
Sbjct: 239 NR--EDSVFKVHVFK 251
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 10 RLDGRTWKVYYSFFKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKVLIF 61
+L R+W V +L GW FA+++ L+ GD+CVFEL RE KV +F
Sbjct: 199 QLGERSWNVKLLNNRLSAGWTSFASESELQPGDVCVFELINREDSVFKVHVF 250
>Glyma09g18790.1
Length = 317
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 1/59 (1%)
Query: 8 LERLDGRTWKVYYSFFKLGGGWKKFATDNNLKVGDICVFELTKR-EPLSLKVLIFPVAQ 65
LE L+GRTW V S + GGW KFA++N+L VGD+CVFEL ++ + L+ KV IF A+
Sbjct: 228 LEVLEGRTWPVICSAPTITGGWHKFASENHLNVGDVCVFELIQKIQGLAFKVSIFRGAE 286
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 73 GPHFTNAAQREARKYTPKNPSFTVSLNPVIKPAYRPPVPISFIREYLNEKKQIINLKI-E 131
G T+ A A + +NPSF + +NP +P F YL + ++ L++ E
Sbjct: 173 GEQLTSTALNRATAFRSENPSFKLVMNPSFIYGDYLEIPPEFAEIYLKKTHAVVILEVLE 232
Query: 132 EKLWPVEFIYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEVHIFKG 190
+ WPV P ++ GW FA E+ L GDVCVFELI K + +V IF+G
Sbjct: 233 GRTWPV-ICSAP-----TITGGWHKFASENHLNVGDVCVFELIQKI-QGLAFKVSIFRG 284
>Glyma11g13210.2
Length = 404
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 83 EARKYTPKNPSFTVSLNPVIKPAYRPPV---PISFIREYLNEKKQIINLKIEE-KLWPVE 138
EA+ + P NP V L P YR + P F ++LN I L+I + WPV
Sbjct: 260 EAKAFEPSNPFCRVVLRPSY--LYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVR 317
Query: 139 FIYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEVHIF 188
+Y + G KLS+GW F+ E+ L GDVCVFEL+ E VL+V IF
Sbjct: 318 CLY--KGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKE--VVLQVTIF 363
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 4 GDIRLERLDGRTWKVYYSF----FKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKVL 59
G I+L+ +GR W V + KL GW +F+ +NNL GD+CVFEL + + + L+V
Sbjct: 302 GFIKLQISNGRQWPVRCLYKGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVT 361
Query: 60 IFPVAQ 65
IF V +
Sbjct: 362 IFHVTE 367
>Glyma11g13210.1
Length = 431
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 83 EARKYTPKNPSFTVSLNPVIKPAYRPPV---PISFIREYLNEKKQIINLKIEE-KLWPVE 138
EA+ + P NP V L P YR + P F ++LN I L+I + WPV
Sbjct: 287 EAKAFEPSNPFCRVVLRPSY--LYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVR 344
Query: 139 FIYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEVHIF 188
+Y + G KLS+GW F+ E+ L GDVCVFEL+ E VL+V IF
Sbjct: 345 CLY--KGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKE--VVLQVTIF 390
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 4 GDIRLERLDGRTWKVYYSF----FKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKVL 59
G I+L+ +GR W V + KL GW +F+ +NNL GD+CVFEL + + + L+V
Sbjct: 329 GFIKLQISNGRQWPVRCLYKGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVT 388
Query: 60 IFPVAQ 65
IF V +
Sbjct: 389 IFHVTE 394
>Glyma12g05250.1
Length = 441
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 84 ARKYTPKNPSFTVSLNPVIKPAYRPPV---PISFIREYLNEKKQIINLKIEE-KLWPVEF 139
A+ + P NP V L P YR + P F ++LN I L+I + WPV
Sbjct: 292 AKAFEPPNPFCRVVLRPSY--LYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRC 349
Query: 140 IYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEVHIFK 189
+Y G KLS+GW F+ E+ L GDVCVFEL+ E VL+V +F+
Sbjct: 350 LY--RGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKE--VVLQVTVFR 395
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 4 GDIRLERLDGRTWKVYYSF----FKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKVL 59
G I+L+ +GR W V + KL GW +F+ +NNL GD+CVFEL + + + L+V
Sbjct: 333 GFIKLQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVT 392
Query: 60 IFPV 63
+F V
Sbjct: 393 VFRV 396
>Glyma12g05250.2
Length = 436
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 84 ARKYTPKNPSFTVSLNPVIKPAYRPPV---PISFIREYLNEKKQIINLKIEE-KLWPVEF 139
A+ + P NP V L P YR + P F ++LN I L+I + WPV
Sbjct: 287 AKAFEPPNPFCRVVLRPSY--LYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRC 344
Query: 140 IYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEVHIFK 189
+Y G KLS+GW F+ E+ L GDVCVFEL+ E VL+V +F+
Sbjct: 345 LY--RGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKE--VVLQVTVFR 390
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 4 GDIRLERLDGRTWKVYYSF----FKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKVL 59
G I+L+ +GR W V + KL GW +F+ +NNL GD+CVFEL + + + L+V
Sbjct: 328 GFIKLQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVT 387
Query: 60 IFPV 63
+F V
Sbjct: 388 VFRV 391
>Glyma16g05110.1
Length = 313
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 1 MKKGDIRLERLDGRTWKVYY--------SFFKLGGGWKKFATDNNLKVGDICVFELTKRE 52
+ K I L+ L+GR W Y + F+L GWK F DNNLKVG++C FEL
Sbjct: 240 LNKRHINLQVLNGRIWPAKYMIQKMKNKTNFRLTSGWKTFVKDNNLKVGNVCTFELIDGT 299
Query: 53 PLSLKVLIF 61
L+L V IF
Sbjct: 300 KLTLLVHIF 308
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 84 ARKYTPKNPSFTVSLNPVIKPAYRPPVPIS--FIREYLNE-KKQIINLKI-EEKLWPVEF 139
A + P NP F V + P + P+P+ F R + K+ INL++ ++WP ++
Sbjct: 200 ASSFKPCNPFFLVVMRPSYIQSNGGPLPLQTKFCRRHFGLLNKRHINLQVLNGRIWPAKY 259
Query: 140 IYYPEFGLG--KLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEVHIFKG 190
+ +L+ GW F K++ L G+VC FELI D L VHIF+G
Sbjct: 260 MIQKMKNKTNFRLTSGWKTFVKDNNLKVGNVCTFELI--DGTKLTLLVHIFRG 310
>Glyma07g21160.1
Length = 437
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 84 ARKYTPKNPSFTVSLNPVIKPAYRPPV---PISFIREYLNEKKQIINLKIEE-KLWPVEF 139
++ + P NP V L P YR + P +F + LN I L++ + W V
Sbjct: 290 SKTFEPTNPFCRVVLRPSY--LYRGCIMYLPSTFAEKNLNGVSGFIKLQLSNGRQWSVRC 347
Query: 140 IYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEVHIFK 189
+Y G KLS+GW F E+ L GDVCVFEL+ E VL+V +F+
Sbjct: 348 LY--RGGRAKLSQGWFEFTVENNLGEGDVCVFELLRMKE--VVLQVTVFR 393
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 4 GDIRLERLDGRTWKVYYSF----FKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKVL 59
G I+L+ +GR W V + KL GW +F +NNL GD+CVFEL + + + L+V
Sbjct: 331 GFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRMKEVVLQVT 390
Query: 60 IFPVAQ 65
+F V +
Sbjct: 391 VFRVTE 396
>Glyma20g01130.1
Length = 435
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 84 ARKYTPKNPSFTVSLNPVIKPAYRPPV---PISFIREYLNEKKQIINLKIEE-KLWPVEF 139
++ + P NP V L P YR + P F + LN I L++ + W V
Sbjct: 288 SKTFEPTNPFCRVVLRPSY--LYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRC 345
Query: 140 IYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEVHIFK 189
+Y G KLS+GW F E+ L GDVCVFEL+ E VL+V +F+
Sbjct: 346 LY--RGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKE--VVLQVTVFR 391
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 4 GDIRLERLDGRTWKVYYSF----FKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKVL 59
G I+L+ +GR W V + KL GW +F +NNL GD+CVFEL + + + L+V
Sbjct: 329 GFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVT 388
Query: 60 IFPVAQ 65
+F V +
Sbjct: 389 VFRVTE 394
>Glyma10g42770.1
Length = 277
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 14 RTWKVYY------SFFKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKVLIFPVAQGG 67
RTW V + LG GW +F DNNLK+GD+CVFE K+ +S +V+IF +
Sbjct: 211 RTWNVKFYPNRCSGQIILGAGWMEFLKDNNLKIGDLCVFEQIKKPGISFRVVIFRDREQS 270
Query: 68 VPSSLG 73
S +
Sbjct: 271 SASQVS 276
>Glyma18g30700.1
Length = 113
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 2 KKGDIRLERLDGRTWKVYYSFFKLGGG------WKKFATDNNLKVGDICVFELTKREPLS 55
K+ I L+ L GR W Y K W F DNNLKVGD+C+FEL L+
Sbjct: 13 KRRLISLQVLSGRIWPAKYQIHKQKTAIRFKLSWNAFVKDNNLKVGDVCIFELVHGTKLT 72
Query: 56 LKVLIF 61
V IF
Sbjct: 73 FLVHIF 78