Miyakogusa Predicted Gene
- Lj0g3v0362259.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0362259.1 tr|G7KUA6|G7KUA6_MEDTR U11/U12 small nuclear
ribonucleoprotein 35 kDa protein OS=Medicago
truncatula,46.67,0.0000000001,RRM,RNA recognition motif domain;
seg,NULL; no description,Nucleotide-binding, alpha-beta plait;
RRM,CUFF.24962.1
(358 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma18g53350.1 420 e-117
Glyma08g48140.1 418 e-117
Glyma01g38120.1 95 1e-19
Glyma11g07200.1 92 6e-19
Glyma11g07200.2 92 7e-19
Glyma15g28380.1 65 9e-11
Glyma19g00460.1 65 2e-10
Glyma12g17150.1 50 4e-06
>Glyma18g53350.1
Length = 347
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 221/341 (64%), Positives = 243/341 (71%), Gaps = 19/341 (5%)
Query: 1 MSLRAKNLNCVFYADSYHPIQAGSIDGTDIVPHDNAIYRAQLCSSIGLYDPFGDPKSIGD 60
MS+R+KNLN VFYADSYHPIQAGSIDGTD+VPHDNA+YRAQLCSSIGL DPFGDPK+ GD
Sbjct: 1 MSVRSKNLNSVFYADSYHPIQAGSIDGTDVVPHDNAVYRAQLCSSIGLDDPFGDPKATGD 60
Query: 61 PYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDREMRRA 120
PYCTLFV RLS LTTED +RKVMSKYGRVKNLRLVRDIVTGAS GYAFVE+E +REMRRA
Sbjct: 61 PYCTLFVARLSRLTTEDDLRKVMSKYGRVKNLRLVRDIVTGASRGYAFVEYETEREMRRA 120
Query: 121 YMDAHHLIVDDCEIIVDYNRQRLMPGWIPXXXXXXXXXXXXXXQLRFGGREKPFRAPLKP 180
YMDAHHLIVDD EIIVDYNRQ+LMPGWIP QLRFGGREKPFRAP KP
Sbjct: 121 YMDAHHLIVDDSEIIVDYNRQQLMPGWIPRRLGGGLSGKKESGQLRFGGREKPFRAPRKP 180
Query: 181 IPYEELKKLGIPPPPEGRYMSRFQVPSPPRREKSLLDREEE--SHRRGSND--------- 229
IPYEELKKLGIPPPPEGRYMSRFQVPSPPR E+SL DREE+ SHRRGSND
Sbjct: 181 IPYEELKKLGIPPPPEGRYMSRFQVPSPPRSERSLSDREEDSHSHRRGSNDRNRNKTEDG 240
Query: 230 -RSSVDMDEGHYKXXXXXXXXXXXXXXXXXXXXXYHXXXXXXXXXXXXXXXXXXXXXXXX 288
RSSVD++EGHY+ YH
Sbjct: 241 LRSSVDIEEGHYR-SSSHRDNHSRGRSSMERSGRYHDRSSSEKEHRHGSSTDKDKHSQKR 299
Query: 289 XXG-----EREHQYRSSTD-EKRSHRRKERDENSRRKHGYT 323
E+E ++RSSTD +K S +RKERDE S+R+ Y+
Sbjct: 300 KESDRSSLEKERRHRSSTDKDKHSRKRKERDERSQRREKYS 340
>Glyma08g48140.1
Length = 358
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/338 (64%), Positives = 241/338 (71%), Gaps = 18/338 (5%)
Query: 1 MSLRAKNLNCVFYADSYHPIQAGSIDGTDIVPHDNAIYRAQLCSSIGLYDPFGDPKSIGD 60
MS+R+KNLN VFYADSYHPIQAGSIDGTD+VPHDNA+YRAQLCSSIGLYDPFGDP++ GD
Sbjct: 1 MSVRSKNLNSVFYADSYHPIQAGSIDGTDVVPHDNAVYRAQLCSSIGLYDPFGDPRAAGD 60
Query: 61 PYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDREMRRA 120
PYCTLFV RLS LT ED +RKVMSKYGRVKN RLVRDIVTGAS GYAFVE+E +REMRRA
Sbjct: 61 PYCTLFVARLSRLTNEDNLRKVMSKYGRVKNFRLVRDIVTGASRGYAFVEYETEREMRRA 120
Query: 121 YMDAHHLIVDDCEIIVDYNRQRLMPGWIPXXXXXXXXXXXXXXQLRFGGREKPFRAPLKP 180
YMDAHHLIVDD EIIVDYNRQ+LMPGWIP QLRFGG+EKPFRAPLKP
Sbjct: 121 YMDAHHLIVDDSEIIVDYNRQQLMPGWIPRRLGGGLSGKKESGQLRFGGKEKPFRAPLKP 180
Query: 181 IPYEELKKLGIPPPPEGRYMSRFQVPSPPRREKSLLDREEE--SHRRGSND--------R 230
IPYEELKKLGIPPPPEGRYMSRFQVPSPPRRE++L DREE+ SHRRGSND R
Sbjct: 181 IPYEELKKLGIPPPPEGRYMSRFQVPSPPRRERNLSDREEDSHSHRRGSNDRNRTEDSHR 240
Query: 231 SSVDMDEGHYKXXXXXXXXXXXXXXXXXXXXXYHXXXXXXX-----XXXXXXXXXXXXXX 285
SSVD+ EGH + YH
Sbjct: 241 SSVDIGEGHCR-SSSHRDDHSRGRSSLERSGRYHDRSSSEKEHRYRSSTDKDKHSQKRKE 299
Query: 286 XXXXXGEREHQYRSSTD-EKRSHRRKERDENS-RRKHG 321
E+EHQYRSSTD +K S +RKE D +S ++HG
Sbjct: 300 SDRSSSEKEHQYRSSTDKDKHSRKRKESDRSSPEKEHG 337
>Glyma01g38120.1
Length = 481
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%)
Query: 40 AQLCSSIGLYDPFGDPKSIGDPYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIV 99
A+ + YDP DP GDPY TLFV +LS TTE I++ YG +K +RLV D
Sbjct: 118 AKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKD 177
Query: 100 TGASCGYAFVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGWIP 149
T GYAF+E+ R+M+ AY A +D ++VD R R +P W P
Sbjct: 178 TNKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRP 227
>Glyma11g07200.1
Length = 482
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 60/110 (54%)
Query: 40 AQLCSSIGLYDPFGDPKSIGDPYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIV 99
A+ + YDP DP GDPY TLFV +LS TTE I++ YG +K +RLV D
Sbjct: 118 AKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKD 177
Query: 100 TGASCGYAFVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGWIP 149
GYAF+E+ R+M+ AY A +D ++VD R R +P W P
Sbjct: 178 INKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRP 227
>Glyma11g07200.2
Length = 480
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 60/110 (54%)
Query: 40 AQLCSSIGLYDPFGDPKSIGDPYCTLFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIV 99
A+ + YDP DP GDPY TLFV +LS TTE I++ YG +K +RLV D
Sbjct: 118 AKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKD 177
Query: 100 TGASCGYAFVEFEKDREMRRAYMDAHHLIVDDCEIIVDYNRQRLMPGWIP 149
GYAF+E+ R+M+ AY A +D ++VD R R +P W P
Sbjct: 178 INKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRP 227
>Glyma15g28380.1
Length = 633
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 29 DIVPHDNAIYRAQLCSSIGLYDPFGDP---KSIGD--------PYCTLFVGRLSPLTTED 77
D VP D + A+L I + +SIGD P LFV +L+P+T ++
Sbjct: 198 DWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDE 257
Query: 78 TIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDREMRRAYMDAHHLIVDDCEIIVD 137
+ + S++G V ++RD TG S YAF+EFE R +AY + ++DD I VD
Sbjct: 258 DLHTIFSRFGTVSMAEIIRDQKTGDSLCYAFIEFEDKRSCEQAYFKMDNALIDDRRIHVD 317
Query: 138 YNRQRLMPGW 147
++ Q + W
Sbjct: 318 FS-QSVAKLW 326
>Glyma19g00460.1
Length = 562
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 12/130 (9%)
Query: 29 DIVPHDNAIYRAQLCSSIGLYDPFGDP---KSIGD--------PYCTLFVGRLSPLTTED 77
D VP D + A+L I + +SIGD P LFV +L+P+T ++
Sbjct: 198 DWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDE 257
Query: 78 TIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDREMRRAYMDAHHLIVDDCEIIVD 137
+ + S++G V ++RD TG S YAF+EFE R +AY + ++DD I VD
Sbjct: 258 DLHTIFSRFGTVSMAEIIRDHKTGDSLCYAFIEFEDKRSCEQAYFKMDNALIDDRRIHVD 317
Query: 138 YNRQRLMPGW 147
++ Q + W
Sbjct: 318 FS-QSVSKLW 326
>Glyma12g17150.1
Length = 145
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 65 LFVGRLSPLTTEDTIRKVMSKYGRVKNLRLVRDIVTGASCGYAFVEFEKDREMRRAYMDA 124
LFV LS TT + +R+ +K+G V + R+V D V+G S G+ FV++ E +
Sbjct: 51 LFVSGLSKRTTTERLREEFAKFGEVVHARVVTDRVSGYSKGFGFVQYATIEEAAKGIEGM 110
Query: 125 HHLIVDDCEIIVDYNRQRLMPG 146
+D I +Y R R PG
Sbjct: 111 DGKFLDGWVIFAEYARPRPPPG 132