Miyakogusa Predicted Gene

Lj0g3v0362209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0362209.1 Non Chatacterized Hit- tr|D8RTC3|D8RTC3_SELML
Putative uncharacterized protein OS=Selaginella
moelle,43.36,4e-18,seg,NULL; zf-ribbon_3,NULL,CUFF.24955.1
         (110 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma14g23850.1                                                       136   4e-33
Glyma13g03440.1                                                        70   6e-13

>Glyma14g23850.1 
          Length = 114

 Score =  136 bits (343), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 68/114 (59%), Positives = 81/114 (71%), Gaps = 4/114 (3%)

Query: 1   MFFFFAGGIEQQVRQVVKSGVGRCINC-SSRADLVEYDKVLKLFFVPVWRWPGKEQLLYC 59
           MFFFF GG++Q++RQV+KSGVG+C  C ++R DLV YDKVLKLFFVPVWRWP K+ LLYC
Sbjct: 1   MFFFFVGGLQQEIRQVLKSGVGKCTFCANNRVDLVNYDKVLKLFFVPVWRWPAKDPLLYC 60

Query: 60  QDCKFLFPQSYSX---XXXXXXXXXXXXXALRCRFCDKEVAAEFAFCPYCGSEL 110
             CK  FP +YS                 ALRCRFCD+ V A+F FCP+CGSEL
Sbjct: 61  GGCKNFFPYNYSLPPGGDGESASPTAVTDALRCRFCDRSVEADFRFCPFCGSEL 114


>Glyma13g03440.1 
          Length = 75

 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 41/50 (82%), Gaps = 1/50 (2%)

Query: 1  MFFFFAGGIEQQVRQVVKSGVGRCINC-SSRADLVEYDKVLKLFFVPVWR 49
          MFFFF GG+ Q++RQV+KSGVG+C  C ++R DLV YDKVLKLFFVP  R
Sbjct: 1  MFFFFVGGLPQELRQVLKSGVGKCTCCANNRVDLVNYDKVLKLFFVPAAR 50