Miyakogusa Predicted Gene

Lj0g3v0358879.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0358879.1 tr|F4K5W6|F4K5W6_ARATH tRNA-splicing endonuclease
positive effector-related protein OS=Arabidopsis
t,39.24,4e-17,SUBFAMILY NOT NAMED,NULL; DNA2/NAM7 HELICASE
FAMILY,NULL; AAA_11,NULL; P-loop containing nucleoside ,CUFF.24688.1
         (402 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g32920.1                                                       320   2e-87
Glyma14g38960.1                                                       285   7e-77
Glyma18g05200.1                                                       259   5e-69
Glyma08g24100.1                                                       256   2e-68
Glyma05g26540.1                                                       200   2e-51
Glyma20g08150.1                                                       171   1e-42
Glyma06g17340.1                                                        86   6e-17

>Glyma11g32920.1 
          Length = 649

 Score =  320 bits (819), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 205/382 (53%), Positives = 248/382 (64%), Gaps = 54/382 (14%)

Query: 4   CCHNNT-KLIWGPPGTGKTKTVACLLFSFLKLKARTLAFAPTNTAVLEVAVRLHSLFTGS 62
           C HN+T KLIWGPPGTGKTKTVA LLFS LKLKARTLA APTNTAVLEVA RL +L   +
Sbjct: 35  CHHNDTIKLIWGPPGTGKTKTVASLLFSLLKLKARTLACAPTNTAVLEVAARLQNLVMET 94

Query: 63  NEHKTYGMGDILLFGNRSRMKVDSYQGLRDMFLDYRVEDLKKCLDPSTGWKHILESMIQL 122
            E  T+G GDI++FGN+SRMKVDSY+ L D+FLDYRV++L KC    +GWKH LESMI+L
Sbjct: 95  LECDTFGFGDIVVFGNKSRMKVDSYRCLNDVFLDYRVDNLLKC----SGWKHSLESMIKL 150

Query: 123 LEEPRKQYILY--ENKKGLMSLQDFAMRNDFHIVHAYRLYKRSQGNDDSVSFEEFVQIKS 180
           +E P++QY  Y  E +  L SL++FA                                  
Sbjct: 151 IEYPKQQYDSYKREEENSLKSLEEFA---------------------------------- 176

Query: 181 KALAEQYQSYKNDKKKNILTMDDFLKQEFKVLSVELKLFMQTLYTHLPSSFISLETVKEM 240
                        +KKNI TM+ +  Q  +    +L+ +M+TL+THLP+S I LE +K+M
Sbjct: 177 ------------KQKKNIKTMEQYFMQRLRSNREQLEEYMRTLHTHLPTSLIPLEEIKKM 224

Query: 241 FRAQDLLRSLEMSLRQAKFKQ-SGADNDNESILSSLGWSSYERVECLGILNSLSKSIPLP 299
             A DLL SLE SL + KFKQ S    D ESIL  LG  S +  ECL  L SLS++I LP
Sbjct: 225 PVALDLLSSLENSLSKDKFKQTSDGCEDGESILDCLGRLSIKNEECLVKLRSLSQTISLP 284

Query: 300 EVDLEGGVAKFCLSKASIILCTATSSIKLDAQGENPVQFLVIDEAAQLKECESTIPLQLS 359
            +  +  +AKFCL  A +I CTA SS KL A G  PV+FLVIDEAAQLKECESTIPLQL 
Sbjct: 285 NITDKYEMAKFCLMSARLIFCTAASSTKLFADGMTPVEFLVIDEAAQLKECESTIPLQLP 344

Query: 360 GLSHCILIGDERQLPALVKSRV 381
           GL H ILIGDE+QLPA+VKS+V
Sbjct: 345 GLHHVILIGDEKQLPAVVKSQV 366


>Glyma14g38960.1 
          Length = 795

 Score =  285 bits (728), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 172/378 (45%), Positives = 222/378 (58%), Gaps = 60/378 (15%)

Query: 4   CCHNNTKLIWGPPGTGKTKTVACLLFSFLKLKARTLAFAPTNTAVLEVAVRLHSLFTGSN 63
           C H  TKLIWGPPGTGKTKT+ACLL   L+++ RTLA APTNTAVLEVA RL +L  GS 
Sbjct: 227 CDHMVTKLIWGPPGTGKTKTLACLLRCLLRVRHRTLACAPTNTAVLEVAARLRNLVNGSL 286

Query: 64  EHKTYGMGDILLFGNRSRMKVDSYQGLRDMFLDYRVEDLKKCLDPSTGWKHILESMIQLL 123
              TYG+GDI+LFGN+SRMKVDSY GLRD+FLD+RV++L KC DP +GWKH LESMIQLL
Sbjct: 287 GFDTYGLGDIVLFGNKSRMKVDSYTGLRDVFLDHRVQNLSKCFDPLSGWKHYLESMIQLL 346

Query: 124 EEPRKQYILYENKKGLMSLQDFAMRNDFHIVHAYRLYKRSQGNDDSVSFEEFVQIKSKAL 183
           E+P++Q                           Y  Y++ +G +        + I S   
Sbjct: 347 EDPKEQ---------------------------YSSYEKEKGIEGHCGA---ISIGSTKE 376

Query: 184 AEQYQSYKNDKKKNILTMDDFLKQEFKVLSVELKLFMQTLYTHLPSSFISLETVKEMFRA 243
            E+Y     D    I       K+++       K+ M+                  MF  
Sbjct: 377 KEKY-----DDHGAISIASTRKKEKYDDNGAIYKVVMK------------------MFSV 413

Query: 244 QDLLRSLEMSLRQAKFKQSGADNDNESILSSLGWSSYERVECLGILNSLSKSIPLPEVDL 303
           +D+L SLE  L+          N  +   SS G       +CL +L S+S +IP  +   
Sbjct: 414 KDILTSLESKLKLILCGCKEEKNIIDCFQSSSG-------KCLSMLRSVSSAIPNTDFLA 466

Query: 304 EGGVAKFCLSKASIILCTATSSIKLDAQGENPVQFLVIDEAAQLKECESTIPLQLSGLSH 363
           +GG+ KFCL  ASIILCTA+ SIKL A+   P+++++IDEAAQLKECES IPL+L GL H
Sbjct: 467 KGGIEKFCLQNASIILCTASGSIKLYAEDMTPIKYVIIDEAAQLKECESVIPLKLPGLKH 526

Query: 364 CILIGDERQLPALVKSRV 381
            IL+GDE+QLPALVKS++
Sbjct: 527 IILVGDEKQLPALVKSKI 544


>Glyma18g05200.1 
          Length = 1063

 Score =  259 bits (661), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 169/379 (44%), Positives = 211/379 (55%), Gaps = 57/379 (15%)

Query: 4   CCHNNT-KLIWGPPGTGKTKTVACLLFSFLKLKARTLAFAPTNTAVLEVAVRLHSLFTGS 62
           C H NT KLIWGPPGTGKTKTVA LLF+ LK K RTL  APTN AVLEV  R   L T S
Sbjct: 258 CSHKNTVKLIWGPPGTGKTKTVASLLFALLKKKCRTLTCAPTNVAVLEVTSRFLRLVTES 317

Query: 63  NEHKTYGMGDILLFGNRSRMKVDSYQGLRDMFLDYRVEDLKKCLDPSTGWKHILESMIQL 122
            ++ TYG+GDILLFGNR RM +D    L D+FLDYR   L KC  P +GWKH LE +I L
Sbjct: 318 IDYHTYGLGDILLFGNRKRMSIDDRDDLLDIFLDYRANILAKCFAPLSGWKHHLEQVILL 377

Query: 123 LEEPRKQYILYENKKGLMSLQDFAMRNDFHIVHAYRLYKRSQGNDDSVSFEEFVQIKSKA 182
           LE P +QY  Y                                    + F +  Q K ++
Sbjct: 378 LENPEEQYREY------------------------------------LKFNK--QSKRRS 399

Query: 183 LAEQYQSYKNDKKKNILTMDDFLKQEFKVLSVELKLFMQTLYTHLPSSFISLETVKEMFR 242
           +  + Q +    K  ILT  +F+ ++   +   ++ F   + THLP+SFISL  VK +F 
Sbjct: 400 ICPRIQKF---NKIQILTFHEFVNKKLNYIWRWMRTFAVDMCTHLPTSFISLRQVKCLFE 456

Query: 243 AQDLLRSLEMSLRQAKFKQSGADNDNESILSSLGWSSYERVECLGILNSLSKSIPLPEVD 302
             DLL+ L   L             N SI     + +  R ECL  L SL K I LP+  
Sbjct: 457 CLDLLKVLAEML------------SNNSITDQQLYKA--RKECLTKLKSLQKII-LPDFF 501

Query: 303 LEGGVAKFCLSKASIILCTATSSIKLDAQGENPVQFLVIDEAAQLKECESTIPLQLSGLS 362
            E  +  FC+ ++ +I CTA+SS +L A     ++ LVIDEAAQLKECES IPLQL GL 
Sbjct: 502 DEYTIKNFCIKRSRMIFCTASSSARLHAVEHYRLEMLVIDEAAQLKECESNIPLQLPGLR 561

Query: 363 HCILIGDERQLPALVKSRV 381
           H +LIGDE+QLPALVKS +
Sbjct: 562 HVVLIGDEKQLPALVKSEI 580



 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/163 (38%), Positives = 86/163 (52%), Gaps = 18/163 (11%)

Query: 197  NILTMDDFLKQEFKVLSVELKLFMQ----------------TLYTHLPSSFISLETVKEM 240
            NI  +DD   Q+ ++  V   L++                  ++  LP S +S   +K++
Sbjct: 889  NIRVLDDTSSQQLELYKVNESLYLAWTIDVLEENSNYVQVLKIWDVLPLSEVS-NLIKKI 947

Query: 241  FRAQDLLRSLEMSLRQAKFKQ-SGADNDNESILSSLGWSSYERVECLGILNSLSKSIPLP 299
              A DLL SLE  L +AKFKQ S   +D ESIL  LG    ++ ECL  L SLS++  LP
Sbjct: 948  PVALDLLSSLENFLSKAKFKQTSDGCDDGESILDCLGRLGIKKEECLVKLKSLSQTTSLP 1007

Query: 300  EVDLEGGVAKFCLSKASIILCTATSSIKLDAQGENPVQFLVID 342
             +  +  +AKF L  A +I CTA SS KL   G  PV+FLVID
Sbjct: 1008 NITDKYEMAKFYLMSARLIFCTAASSTKLFTDGMTPVEFLVID 1050


>Glyma08g24100.1 
          Length = 982

 Score =  256 bits (655), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 167/384 (43%), Positives = 215/384 (55%), Gaps = 65/384 (16%)

Query: 6   HNNTKLIWGPPGTGKTKTVACLLFSFLKLKARTLAFAPTNTAVLEVAVR--LHSLFTGSN 63
            N+ KLIWGPPGTGKTKTV  +LF  LKLK RTL  APTN AVLEVA R  +      S+
Sbjct: 249 QNSVKLIWGPPGTGKTKTVGLMLFCLLKLKCRTLTCAPTNVAVLEVAKRVLVQVRKNESH 308

Query: 64  EHKTYGMGDILLFGNRSRMKVDSYQGLRDMFLDYRVEDLKKCLDPSTGWKHILESMIQLL 123
           E+  YG+GDI+LFGN  RM +D +  L D+FLDYRV  L+K L     WKH L S+I LL
Sbjct: 309 EYGGYGLGDIVLFGNGKRMNIDDHIELHDVFLDYRVNALRKFLGV---WKHSLASIISLL 365

Query: 124 EEPRKQYILYENKKGLMSLQDFAMRNDFHIVHAYRLYKRSQGNDDSVSFEEFVQIKSKAL 183
           E P++ ++ Y NK      ++  + ND    H+ +  K  Q   +  +FEEF+  +  +L
Sbjct: 366 ENPQRLFLEYVNKT-----EEDVIVND----HS-QSKKNEQDTAEPWTFEEFINKRLDSL 415

Query: 184 AEQYQSYKNDKKKNILTMDDFLKQEFKVLSVELKLFMQTLYTHLPSSFISLETVKEMFRA 243
            E            +LT                  FM  L  HLP+SFISL      FRA
Sbjct: 416 RE------------LLTFS----------------FM-NLCKHLPTSFISLTDATNTFRA 446

Query: 244 QDLLRSLE--MSLRQAKFKQS-GADNDNESILSSLGWSSYERV---ECLGILNSLSKSIP 297
           +DLL S+   +  +    KQ       NES          ER+   ECL IL  L K   
Sbjct: 447 RDLLHSISTLVGKQHEGIKQELYGSKHNES----------ERLTIKECLDILKLLPK--- 493

Query: 298 LPEVDLEGGVAKFCLSKASIILCTATSSIKLDAQGENPVQFLVIDEAAQLKECESTIPLQ 357
             +  + G +  FCLS A ++ CT +SS KL  +G  P++ LVIDEAAQLKECE+TIPLQ
Sbjct: 494 --KFRIRGSLRDFCLSNACLVFCTVSSSAKLHEKGMTPIELLVIDEAAQLKECEATIPLQ 551

Query: 358 LSGLSHCILIGDERQLPALVKSRV 381
           L G+ H ILIGDERQLPA+V+S++
Sbjct: 552 LYGIRHSILIGDERQLPAMVQSKI 575


>Glyma05g26540.1 
          Length = 1146

 Score =  200 bits (508), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 199/389 (51%), Gaps = 65/389 (16%)

Query: 2   INCCHNNT-KLIWGPPGTGKTKTVACLLFSFLKLKARTLAFAPTNTAVLEVAVRLHSL-- 58
           I CCH +T  LIWGPPGTGKTKT+  LL++ LK+  RTL  APTN AV EVA R+ S+  
Sbjct: 265 IQCCHKSTVDLIWGPPGTGKTKTLGTLLYALLKMNHRTLVCAPTNVAVKEVASRVLSMVR 324

Query: 59  --FTGSNEHKTYGMGDILLFGNRSRMKVDSYQGLRDMFLDYRVEDLKKCLDPSTGWKHIL 116
             F  ++E     +GD++LFGN  R+KV +   + D++LDYRV+ L  C  P TGW+   
Sbjct: 325 ESFDRNSEALFCALGDMVLFGNHERLKVGA--DIEDIYLDYRVKHLMMCFAPLTGWRCCF 382

Query: 117 ESMIQLLEEPRKQY-ILYENKKGLMSLQDFAMRNDFHIVHAYRLYKRSQGNDDSVSFEEF 175
            SMI LLE     Y I  EN+          +R D                 + VS   F
Sbjct: 383 SSMIDLLENCVSHYHIFIENE----------LRKD----------------QEQVSDNNF 416

Query: 176 VQIKSKALAEQYQSYKNDKKKNILTMDDFLKQEFKVLSVELKLFMQTLYTHLPSSFISLE 235
            + K  + +   ++ K  K     T  +F+++ F  ++V+L+  +  L TH+        
Sbjct: 417 NKTKDNSTSHCSETEKVHK-----TFLEFVRERFLSVAVQLRDCISVLCTHVA------R 465

Query: 236 TVKEMFRAQDLLRSLEMSLRQAKFKQSGADNDNESILSSLGWSSYERVECLGILNSLSKS 295
            ++++F   + L                  N  ES +         R +CL  L +L  S
Sbjct: 466 ILEKLFSPPEHLH-----------------NSCESSVGVEYLLYKSRTDCLSSLRTLKGS 508

Query: 296 ---IPLPEVDLEGGVAKFCLSKASIILCTATSSIKLDAQGENPVQFLVIDEAAQLKECES 352
              + LP    +  + +FCL  +S+I  TA+SS KL +    P++ LVIDEAAQLKECES
Sbjct: 509 LDELSLPNSMNKESIREFCLQTSSLIFSTASSSFKLHSVVMEPLKVLVIDEAAQLKECES 568

Query: 353 TIPLQLSGLSHCILIGDERQLPALVKSRV 381
            IPL L  + H +L+GDE QLPA+V S V
Sbjct: 569 IIPLLLPNVEHAVLVGDECQLPAMVASNV 597


>Glyma20g08150.1 
          Length = 788

 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/410 (31%), Positives = 206/410 (50%), Gaps = 65/410 (15%)

Query: 2   INCCHNNT-KLIWGPPGTGKTKTVACLLFSFLKLKARTLAFAPTNTAVLEVAVRLHSLFT 60
           +NC HN+  KLIWGPPGTGKT+T+  LL++ LK+K R L  APTN A+ EVA R+  +  
Sbjct: 147 LNCNHNSAVKLIWGPPGTGKTRTLGTLLYALLKMKYRVLVCAPTNVAIKEVASRVVDIMK 206

Query: 61  GSNEHKT----YGMGDILLFGNRSRMKVDSYQGLRDMFLDYRVEDLKKCLDPSTGWKHIL 116
            ++  ++      MG++LLFG   R+K+   + + D++LD+RV+ L +C  P  G+   L
Sbjct: 207 EAHSKESGDLFCSMGEVLLFGYNERLKIG--EDVEDVYLDHRVQQLTECFSPYNGFSSSL 264

Query: 117 ESMIQLLEEPRKQYILY-ENKKGLMSLQDFAMRNDFHIVHAYRLYKRSQGNDDSVSFEEF 175
           +SMI  LE     Y +Y EN           M+ +  +  ++ ++ R   +  ++  + F
Sbjct: 265 KSMIGFLEYCVSDYHIYVEN-----------MKREGSMAKSFLVFLREGFHSIALPLKAF 313

Query: 176 VQIKSKALAEQYQSYKNDKKKNILTMDDFLKQEFKVLSVELKLFMQTL-----YTHLPSS 230
           + I    +A  +    N   +N+L +++ L + F+ L ++  LF + L     Y  LP  
Sbjct: 314 ISILCTHVAMSHLLKHN--YQNLLCLNEAL-ESFQDLLLKNTLFSERLEKLFSYKKLP-- 368

Query: 231 FISLETVKEMFRAQDLLRSLEMSLRQAKFKQSGADNDNESILSSLGWSSYE-RVECLGIL 289
            ++ +T+   F                       D D         +  YE R  CL  L
Sbjct: 369 -VAYQTISWSF-----------------------DGD--------AYQLYEKRTACLNAL 396

Query: 290 NSLSKSIP--LPEVDLEGGVAKFCLSKASIILCTATSSIKLDAQGENPVQFLVIDEAAQL 347
            ++  S+   + +      + +FC   +S+I  TA+ S KL +    P+  LVIDEAA L
Sbjct: 397 LAVEHSLQDFMLKKSNNSEIREFCFQTSSLIFSTASGSHKLHSLTMKPLNILVIDEAAML 456

Query: 348 KECESTIPLQLSGLSHCILIGDERQLPALVKSRVFNLHITFSVILNMDFF 397
           K+CES IPL L G+SH +L GDE QL ++V+S    +H   S   N  F+
Sbjct: 457 KDCESIIPLLLPGISHALLFGDECQLSSMVRSN-HRMHPQISSFPNSYFY 505


>Glyma06g17340.1 
          Length = 475

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 4   CCHNNTKLIWGPPGTGKTKTVACLLFSFLKLKARTLAFAPTNTAVLEVAVRLHSLFTGSN 63
           C HN+   + G P   K K      F+ LK+K R L  APTN A+ EVA R+ +L   S+
Sbjct: 34  CNHNSVVKLMGSPWDRKDKIFGHTTFALLKMKYRVLVCAPTNIAIKEVASRVVTLVKESH 93

Query: 64  EHKT----YGMGDILLFGNRSRMKVDSYQGLRDMFLDYRVEDLKKCLDPSTGWKHILESM 119
             ++      MGD+LL GN  R+K+   + ++D++LD+  + L +CL PSTG    L+SM
Sbjct: 94  AKESGDLFCSMGDLLLSGNNERLKIG--EDIKDIYLDHLAQQLAECLAPSTGLSSCLKSM 151

Query: 120 IQLLEEPRKQY 130
           I  LE     Y
Sbjct: 152 IGFLENCTSYY 162