Miyakogusa Predicted Gene

Lj0g3v0358139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0358139.1 Non Chatacterized Hit- tr|C5WSU0|C5WSU0_SORBI
Putative uncharacterized protein Sb01g042980 OS=Sorghu,54.08,7e-19,
,CUFF.24636.1
         (112 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g22000.1                                                       171   1e-43

>Glyma06g22000.1 
          Length = 459

 Score =  171 bits (434), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/103 (80%), Positives = 90/103 (87%), Gaps = 1/103 (0%)

Query: 1   MLLQIPRFSNSLRDPFDVDQAYLHRKTILHNRKPPRNAARSLDESELARKIVYGWEEASV 60
           ML QIPR +NSLRDPFDVDQ YLHRKTILHN+KP  N+A SLDESELARKIV+GWE+AS 
Sbjct: 1   MLFQIPRLTNSLRDPFDVDQYYLHRKTILHNQKPS-NSASSLDESELARKIVHGWEKASS 59

Query: 61  EVHQTSKQFIGAVVDLVDGEIPSEEFHEVALAVYRLFGRPMEE 103
           +V Q  KQFIGAVVDLVDGE  SEEFHEVAL +YRLFGRPMEE
Sbjct: 60  DVRQAYKQFIGAVVDLVDGETRSEEFHEVALTMYRLFGRPMEE 102