Miyakogusa Predicted Gene

Lj0g3v0357259.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0357259.1 tr|G7IJK6|G7IJK6_MEDTR F-box/LRR-repeat protein
OS=Medicago truncatula GN=MTR_2g082800 PE=4 SV=1,33.73,3e-16,FBD,FBD;
domain in FBox and BRCT domain containing pl,FBD,gene.g28070.t1.1
         (262 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g33790.1                                                       113   2e-25
Glyma15g38970.1                                                        72   6e-13
Glyma17g27280.1                                                        69   5e-12

>Glyma13g33790.1 
          Length = 357

 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 127/236 (53%), Gaps = 29/236 (12%)

Query: 21  LPSFACLSSLTVLHLRGISLIGET-CNNSGNIHLIFPLLRNYKTEDCTWSSSLKYVTLEA 79
           +P+F  LSSL  L L GI +I  T  N+S N+ L FP+LR  +  +C+W + ++ VTLE 
Sbjct: 145 VPTFVYLSSLIFLKLSGIIVICNTPSNDSKNLTLNFPVLRECEIVNCSWLN-VEGVTLEV 203

Query: 80  PLLEVVSIQNATHKHP--YPTIKFCASRLIEFAYDDYP--LPDPIVFDLSEAHIVDADIH 135
           PLLEV+SI++     P  +   K CA  L E +Y  +   L DP  F L   ++      
Sbjct: 204 PLLEVLSIKHTRSLSPDFHSITKVCAPHLRELSYTGHGHLLRDP-TFCLELGNV------ 256

Query: 136 IGWTKDEQEQEIMVLSSKILKQFKTVECLKFQKWSSKNLLQSDQELLNYDPVPECLLTTL 195
                     EI+++    L+    ++ L  Q+     L Q D+ELLN + VP C  + L
Sbjct: 257 --------NGEILLI---FLRNTPCLKTLILQE-----LWQFDEELLNPENVPSCFTSNL 300

Query: 196 QVVKFEEFKGSEHQLNFAKFVMGNALALKKMRFIPKWKLFNPTLEEVKEKLFSFEK 251
           + VKF + KG +H+L FAKFVM  A  LK+  F PK  +     E+VK+K+ SF++
Sbjct: 301 EEVKFRKIKGVQHELRFAKFVMEYAQVLKRASFSPKRNMHGWIFEKVKKKILSFKR 356


>Glyma15g38970.1 
          Length = 442

 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 138/294 (46%), Gaps = 55/294 (18%)

Query: 5   SLEQLGLSVHRCVNIKLPSFACLSSLTVLHLRGISLIGETCNNSGNIHLIFPLLRNYKTE 64
           SL QL L + +C  I +P F+ L +L  L + GI L+ E+ N S ++ L FP+L+  +  
Sbjct: 153 SLVQLVLQM-KC-TISVPIFSSLPNLQNLSISGIRLVSESSNYSEDLILNFPVLKVLEAR 210

Query: 65  DCTWSSSLKYVTLEAPLLEVVSI------QNATHKHPYPTIKFCASRLIEFAYDDYPLPD 118
            C W +  + + ++APLLE  SI       N +HK     IK  A  L +F+Y      +
Sbjct: 211 GCEWLTK-QNIGIKAPLLERFSIAIWNSLSNKSHK---SAIKIFAPNLADFSYGGDLEQE 266

Query: 119 PIVFDLSEAH-------IVDADIHIGWTKDEQEQEIMVLSSKI-------------LKQF 158
            I+ + +  H        +   +H    +  + +++ +L  K+             LK F
Sbjct: 267 IILLNSASIHNKMTNVGKLGFQVHKLLAQIREVKQLKLLFYKVCYLMPCGWEFCRNLKFF 326

Query: 159 KTVECLKFQK--------WSSKNLLQSDQ-------ELLNYDPV------PECLLTTLQV 197
             ++ L   +        +S  + LQ ++        +LN  P+        C L++L+V
Sbjct: 327 FVIQVLMHARDIFTHLPAFSRLSYLQLNEVTGEALLNILNNCPILSSLVLQNCFLSSLKV 386

Query: 198 VKFEEFKGSEHQLNFAKFVMGNALALKKMRFIPK-WKLFNPT-LEEVKEKLFSF 249
            +F+EF   EH+L  AKFV+ NA  L++M      W  ++   +E+VK+++ SF
Sbjct: 387 FQFKEFNVREHELLLAKFVLANAAVLEQMIICTAFWLRYSEIDVEKVKDQILSF 440


>Glyma17g27280.1 
          Length = 239

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 50/85 (58%), Gaps = 4/85 (4%)

Query: 55  FPLLRNYKTEDCTWSSSLKYVTLEAPLLEVVSIQNA---THKHPYPTIKFCASRLIEFAY 111
           FP+LR Y TEDC WS+ +K VTLE PLLEV+SI+ +     K     IKFCA  L +F Y
Sbjct: 139 FPVLREYLTEDCNWSN-VKGVTLEVPLLEVLSIKYSRFPISKESNTVIKFCAPCLAKFYY 197

Query: 112 DDYPLPDPIVFDLSEAHIVDADIHI 136
               LPD    DLS  HI  A I I
Sbjct: 198 YGLLLPDTNSLDLSIGHIAYAHIDI 222