Miyakogusa Predicted Gene

Lj0g3v0356789.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0356789.1 tr|A9RSH0|A9RSH0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_109595,34.18,9e-19,FAM175PLANT,FAM175 family, plant;
seg,NULL,CUFF.24569.1
         (206 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g31570.1                                                        92   3e-19
Glyma03g05690.1                                                        67   9e-12

>Glyma01g31570.1 
          Length = 307

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/52 (76%), Positives = 48/52 (92%)

Query: 143 SHVHTHEYRAYQFRRAALSFDAKSINIVNIGPAFRGHYGSFSPNSPLPALNC 194
           SHVHTHEYRA+QFR AALSF+ +S+++VNIGPAFRGHYG+FSPNS LP L+C
Sbjct: 153 SHVHTHEYRAFQFRPAALSFEPRSLDVVNIGPAFRGHYGAFSPNSNLPPLDC 204



 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/39 (87%), Positives = 37/39 (94%)

Query: 1  MDDPPLQNIAISGPTLASLIQRFSTAPSAIDGLLFGHVT 39
          M+DPPLQ IAISGPTLASLIQRFST+PS+I GLLFGHVT
Sbjct: 1  MEDPPLQKIAISGPTLASLIQRFSTSPSSIHGLLFGHVT 39


>Glyma03g05690.1 
          Length = 294

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 35/38 (92%)

Query: 1  MDDPPLQNIAISGPTLASLIQRFSTAPSAIDGLLFGHV 38
          MDD PLQ IAISGPTLASLIQRFST+PS++ GLLFGHV
Sbjct: 1  MDDQPLQKIAISGPTLASLIQRFSTSPSSLHGLLFGHV 38