Miyakogusa Predicted Gene

Lj0g3v0354159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0354159.1 tr|G7IAW3|G7IAW3_MEDTR 60S ribosomal protein L7
OS=Medicago truncatula GN=MTR_1g108780 PE=4 SV=1,54.32,2e-17,no
description,DNA-binding pseudobarrel domain; B3,B3 DNA binding domain;
DNA-binding pseudobarrel d,CUFF.24381.1
         (83 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g24270.1                                                        63   7e-11
Glyma12g05250.1                                                        60   6e-10
Glyma12g05250.2                                                        60   7e-10
Glyma11g13210.2                                                        60   7e-10
Glyma11g13210.1                                                        59   9e-10
Glyma07g21160.1                                                        56   8e-09
Glyma20g01130.1                                                        56   1e-08
Glyma09g18790.1                                                        49   1e-06

>Glyma20g24270.1 
          Length = 254

 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 6/77 (7%)

Query: 5   PNPFIREYFNDMQQTIMLQYEKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDACV 64
           P P ++    + ++ + LQ  ++ W VKL+      + +LS GW  FA +S+L  GD CV
Sbjct: 181 PLPDLKGIIENKEKYLKLQLGERSWNVKLL------NNRLSAGWTSFASESELQPGDVCV 234

Query: 65  FELINKEDPVLDVHIFR 81
           FELIN+ED V  VH+F+
Sbjct: 235 FELINREDSVFKVHVFK 251


>Glyma12g05250.1 
          Length = 441

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 4   VPNPFIREYFNDMQQTIMLQYEK-KLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDA 62
           +P+ F  ++ N +   I LQ    + WPV+  C  + G  KLS+GW EF+ ++ L  GD 
Sbjct: 319 LPSCFAEKHLNGVSGFIKLQISNGRQWPVR--CLYRGGRAKLSQGWFEFSLENNLGEGDV 376

Query: 63  CVFELINKEDPVLDVHIFR 81
           CVFEL+  ++ VL V +FR
Sbjct: 377 CVFELLRMKEVVLQVTVFR 395


>Glyma12g05250.2 
          Length = 436

 Score = 59.7 bits (143), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 4   VPNPFIREYFNDMQQTIMLQYEK-KLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDA 62
           +P+ F  ++ N +   I LQ    + WPV+  C  + G  KLS+GW EF+ ++ L  GD 
Sbjct: 314 LPSCFAEKHLNGVSGFIKLQISNGRQWPVR--CLYRGGRAKLSQGWFEFSLENNLGEGDV 371

Query: 63  CVFELINKEDPVLDVHIFR 81
           CVFEL+  ++ VL V +FR
Sbjct: 372 CVFELLRMKEVVLQVTVFR 390


>Glyma11g13210.2 
          Length = 404

 Score = 59.7 bits (143), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 4   VPNPFIREYFNDMQQTIMLQYEK-KLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDA 62
           +P+ F  ++ N +   I LQ    + WPV+  C  K G  KLS+GW EF+ ++ L  GD 
Sbjct: 288 LPSCFAEKHLNGVSGFIKLQISNGRQWPVR--CLYKGGRAKLSQGWFEFSLENNLGEGDV 345

Query: 63  CVFELINKEDPVLDVHIF 80
           CVFEL+  ++ VL V IF
Sbjct: 346 CVFELLRMKEVVLQVTIF 363


>Glyma11g13210.1 
          Length = 431

 Score = 59.3 bits (142), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 4   VPNPFIREYFNDMQQTIMLQYEK-KLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDA 62
           +P+ F  ++ N +   I LQ    + WPV+  C  K G  KLS+GW EF+ ++ L  GD 
Sbjct: 315 LPSCFAEKHLNGVSGFIKLQISNGRQWPVR--CLYKGGRAKLSQGWFEFSLENNLGEGDV 372

Query: 63  CVFELINKEDPVLDVHIF 80
           CVFEL+  ++ VL V IF
Sbjct: 373 CVFELLRMKEVVLQVTIF 390


>Glyma07g21160.1 
          Length = 437

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 4   VPNPFIREYFNDMQQTIMLQYEK-KLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDA 62
           +P+ F  +  N +   I LQ    + W V+  C  + G  KLS+GW EF  ++ L  GD 
Sbjct: 317 LPSTFAEKNLNGVSGFIKLQLSNGRQWSVR--CLYRGGRAKLSQGWFEFTVENNLGEGDV 374

Query: 63  CVFELINKEDPVLDVHIFR 81
           CVFEL+  ++ VL V +FR
Sbjct: 375 CVFELLRMKEVVLQVTVFR 393


>Glyma20g01130.1 
          Length = 435

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 4   VPNPFIREYFNDMQQTIMLQYEK-KLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDA 62
           +P+ F  +  N +   I LQ    + W V+  C  + G  KLS+GW EF  ++ L  GD 
Sbjct: 315 LPSCFAEKNLNGVSGFIKLQLSNGRQWSVR--CLYRGGRAKLSQGWFEFTVENNLGEGDV 372

Query: 63  CVFELINKEDPVLDVHIFR 81
           CVFEL+  ++ VL V +FR
Sbjct: 373 CVFELLRTKEVVLQVTVFR 391


>Glyma09g18790.1 
          Length = 317

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 8/81 (9%)

Query: 4   VPNPFIREYFNDMQQTIMLQ-YEKKLWPVKLICYPKKGSGKLSKGWVEFAGKSKLVVGDA 62
           +P  F   Y       ++L+  E + WPV  IC     +  ++ GW +FA ++ L VGD 
Sbjct: 210 IPPEFAEIYLKKTHAVVILEVLEGRTWPV--IC----SAPTITGGWHKFASENHLNVGDV 263

Query: 63  CVFELINK-EDPVLDVHIFRG 82
           CVFELI K +     V IFRG
Sbjct: 264 CVFELIQKIQGLAFKVSIFRG 284