Miyakogusa Predicted Gene

Lj0g3v0353889.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0353889.2 tr|D7KU36|D7KU36_ARALL DNA-directed RNA
polymerase OS=Arabidopsis lyrata subsp. lyrata
GN=ARALYDRAFT,27.49,4e-18,seg,NULL; beta and beta-prime subunits of
DNA dependent RNA-polymerase,NULL,CUFF.24477.2
         (788 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma15g37710.1                                                       777   0.0  
Glyma13g26690.1                                                       768   0.0  
Glyma01g42480.1                                                       106   8e-23
Glyma03g16500.1                                                        93   1e-18
Glyma10g24210.1                                                        71   6e-12

>Glyma15g37710.1 
          Length = 2101

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1015 (48%), Positives = 596/1015 (58%), Gaps = 235/1015 (23%)

Query: 1    MLEELKINMAEVFQRCQEKLRS----------------------------LNRKRKYY-- 30
            MLEELKI+MA VF +C E+L+S                            ++R +  Y  
Sbjct: 953  MLEELKISMAYVFDKCHERLKSFSQKKKKKMTLFLSYLIVRGTVKCSIFVVSRIQDLYFI 1012

Query: 31   ----------------QTLK-----------STELFFS---ESCASPNFSSPCVTF--IS 58
                            +T+K           S  LFF+   ESC+S + ++PC+TF   +
Sbjct: 1013 DHEYCTWKTMVFLSVSETIKNEIFPGLFMTISYLLFFTIPTESCSSSHPAAPCLTFWLKN 1072

Query: 59   LDGDGLDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELA 118
             D D LD   ++LA+ ICPVL  TIIQGDPRISSA+I W++PD+N WVRNP KSSNGELA
Sbjct: 1073 YDSD-LDNAVKVLAEKICPVLFKTIIQGDPRISSASIIWVSPDTNTWVRNPYKSSNGELA 1131

Query: 119  LDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQR 178
            LDIILE+ AVKQSGDAWR+VLD+CLPVL+LIDTRRSIPYAIKQ+QELLGISCTFDQAIQR
Sbjct: 1132 LDIILEKEAVKQSGDAWRVVLDACLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQR 1191

Query: 179  LAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPK 238
            +AASVKMVAKGVLREHLILLASSMTCGGNLVGFN GGYKAL+RQLNIQVPFTDATLFTPK
Sbjct: 1192 VAASVKMVAKGVLREHLILLASSMTCGGNLVGFNIGGYKALSRQLNIQVPFTDATLFTPK 1251

Query: 239  KCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFLH 298
            KCFERAAEKCHTDSLSSIVASCSWGK VAVGTGS+FDV+WDA E KSNE+EGMDVY+FLH
Sbjct: 1252 KCFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDVVWDANEIKSNEIEGMDVYSFLH 1311

Query: 299  MVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGPESNGW 358
            MVKS  NGEEE DAC              D  +SPQH SG +AVFEE  E +NG  SNGW
Sbjct: 1312 MVKSFTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFEENPEVLNGSTSNGW 1371

Query: 359  GATTDRTETKSTQWSAW-ESNKAETKDGGSQRVHEDSWTSRDVMKDDSQMTNAWDGNV-- 415
              ++++ E+K+ +WS W  SNKAE KDG S+   ++SW  + V ++DS  +N W  +   
Sbjct: 1372 DVSSNQGESKTNEWSGWASSNKAEIKDGRSEIAPKNSW-GKTVNQEDSSKSNPWSTSTIA 1430

Query: 416  EQTKTISNDWTAWGKNKSEI-----QDNVAEKAEG--ECGSSEMWKTAVIQEGSSKSNAW 468
            +QTKT SN+W+AWG NKSEI       N  E  +G  E      W   V QE SSKSNAW
Sbjct: 1431 DQTKTKSNEWSAWGSNKSEIPVGWASSNKTEIKDGRSETAQENSWGKTVNQEDSSKSNAW 1490

Query: 469  KSNI--------------------------EQRSDEDSWTSQKLKADVIQ-DSSKPSSWG 501
             ++                            +   EDSW S K KADV Q D+S+  +W 
Sbjct: 1491 NTSTTVDHANTKSNEWSAWGSNQSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSRLGAWD 1550

Query: 502  A----KPKSNDSSNWGRNKDEIQDVVSRRAEDDS-------------WSSKKQLSSDATQ 544
            A    + KS++ S WG+ KD  Q+  SR    D+             W  KK    D TQ
Sbjct: 1551 ANAADQTKSSEWSGWGKKKDVTQEDNSRLGAWDANAADQTKSRDWSGWGKKK----DITQ 1606

Query: 545  EDSSKFSFWGGNKDTTKPKSNDWSSWGGNRDGIQDG------GSKRAQD----------- 587
            ED+S+   W  N    + KS++WS WG  +D I+        G +R +            
Sbjct: 1607 EDNSRLGAWDANA-ADQTKSSEWSGWGKKKDQIRQNLMNGQVGERRKKLPKKTIPGLVLG 1665

Query: 588  ---------------------DSWSSQKDVTRESSSKVDAWGANNEASNPKSNDWSAWGK 626
                                   W  +KDVT+E +S++ AW A N A   KSN+WS WGK
Sbjct: 1666 MQIQQIRQNLMNEDQTKSNEWSGWGKKKDVTQEDNSRLGAWDA-NAADQTKSNEWSDWGK 1724

Query: 627  NKDGTQD-------GGSER----AQDDSSSLGKWKA-------------------ESQVE 656
             K+ TQ+       G  +R     Q+D+S  G W A                   +S++ 
Sbjct: 1725 KKEVTQEDNVQDSWGSGKRKDKVTQEDNSGSGGWGANRTDLAKSKSSEWSSWGKNKSEIP 1784

Query: 657  A---DTVQEDS-------------SKSKAWERNSDNV----------------------K 678
            A   + VQ DS             +   AW RN                          K
Sbjct: 1785 AGGSENVQNDSWGSGKLEDDTQKENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWKAESK 1844

Query: 679  VGNSSWGKPKFPETQAWDPQKETNQGAGSRGWDSQIASANSDSDRNFQWGKQGRESFKK- 737
            VGN+SWGKPK  E+QAWD   ++NQ + S+GW+S IASANS+S++ FQWGKQGR+SFKK 
Sbjct: 1845 VGNASWGKPKSSESQAWDSHNQSNQNSSSQGWESHIASANSESEKGFQWGKQGRDSFKKN 1904

Query: 738  ----SQGWGSNAGDMKNKNRPGRAPGPRLDMYSSEEQDILKDIEPIVQSIRRIMQ 788
                SQG GSNAGD KN+NRP RAPG RLD+YSS EQD+LKDIEPI+QSIRRIMQ
Sbjct: 1905 RFEGSQGRGSNAGDWKNRNRPPRAPGQRLDIYSSGEQDVLKDIEPIMQSIRRIMQ 1959


>Glyma13g26690.1 
          Length = 1820

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/947 (48%), Positives = 582/947 (61%), Gaps = 182/947 (19%)

Query: 1    MLEELKINMAEVFQRCQEKLRSLNRKRKYYQTLKSTELFFSESCASPNFSSPCVTFISLD 60
            MLEELKI+MA VF++C E+L+S +RK+K  Q+        +ESC+S + ++PC+TF   +
Sbjct: 769  MLEELKISMANVFEKCLERLKSFSRKKKARQSFLIIRGTVNESCSSSHPAAPCLTFWLKN 828

Query: 61   GDG-LDKTTEILADVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELAL 119
             D  LD   ++L++ ICPVL  TII+GDPRISSA+I W++PD+N WVRNP KSSNGELAL
Sbjct: 829  HDSDLDNAVKVLSENICPVLFETIIKGDPRISSASIIWVSPDTNTWVRNPYKSSNGELAL 888

Query: 120  DIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRL 179
            DI+LEE AVKQSGDAWRIVLDSCLPVL+LIDTRRSIPYAIKQ+QELLGISCTFDQAIQR+
Sbjct: 889  DIVLEEEAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRV 948

Query: 180  AASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKK 239
            AASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKAL+RQLNIQVPFTDATLFTPKK
Sbjct: 949  AASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALSRQLNIQVPFTDATLFTPKK 1008

Query: 240  CFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSRFDVLWDAKER---------------K 284
            CFERAAEKCHTDSLSSIVASCSWGK VAVGTGS+FD++WD+ E                K
Sbjct: 1009 CFERAAEKCHTDSLSSIVASCSWGKHVAVGTGSKFDIVWDSSEVFDNTDLILDLIRIGIK 1068

Query: 285  SNELEGMDVYNFLHMVKSLINGEEENDACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFE 344
            SNE+EGMDVY+FLHMVKS+ NGEEE DAC              D  +SPQH SG +AVFE
Sbjct: 1069 SNEIEGMDVYSFLHMVKSVTNGEEETDACLGEDIDDLLEEEYMDLGMSPQHNSGFEAVFE 1128

Query: 345  ETFEAMNGPESNGWGATTDRTETKSTQWSAWESNKAETKDGGSQRVHEDSWTSRDVMKDD 404
            E  E +NG  SNGW  ++++T++K+ +WS W S+    KDG S+   E+SW  + V ++D
Sbjct: 1129 ENPEVLNGSTSNGWDVSSNQTQSKTNEWSGWASS---NKDGRSETAQENSW-GKTVNQED 1184

Query: 405  SQMTNAWDGNV--EQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEMWKTAV----- 457
            S  +NAW+ +   +QTKT SN+W+ WG NKSEI    ++  + +   S  W T+      
Sbjct: 1185 SSKSNAWNTSTTADQTKTKSNEWSDWGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTSNQT 1244

Query: 458  ------------------------IQEGSSKSNAWKSN-----IEQRSDE-DSWTSQKLK 487
                                    +QE SSKSN W ++      + +S+E  +W S K +
Sbjct: 1245 KTKSKEWSAWGSNKSEIPACGSKAVQEDSSKSNTWNTSTTADQTKTKSNEWSAWGSNKSE 1304

Query: 488  AD------VIQDSSKPSSWG-------AKPKSNDSSNWGRNKDEIQDVVSRRAEDDSWSS 534
                    V +DSSK ++W         K KSN+ S WG NK EI    S+  ++DS  S
Sbjct: 1305 IPAGGSKAVQEDSSKSNAWNRSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKS 1364

Query: 535  ---KKQLSSDATQEDSSKFSFWGGNK-------------------------DTTKPKSND 566
                   ++D T+  S+++S WG NK                         D TK KSN+
Sbjct: 1365 NAWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKAWNTSTTADQTKTKSNE 1424

Query: 567  WSSWGGNRDGIQDGGSKRAQDDSWSSQK---DVTRESSSKVDAWGANNEASNPKSNDWSA 623
            WS+   N+  I  GGSK  Q+DSW S K   DV +E +S++ AW A N A   KSN+WS 
Sbjct: 1425 WSARVSNKSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSRLGAWDA-NAADQTKSNEWSG 1483

Query: 624  WGKNKDGTQD-------GGSER----AQDDSSSLGKWKA--------------------- 651
            WGK KD TQ+       G  +R     Q+D+S  G W A                     
Sbjct: 1484 WGKKKDVTQEDNVQHSWGSGKRKDKVTQEDNSGSGDWGANRTDLAITKSSEWSSWGKNKT 1543

Query: 652  ------ESQVEADT--------VQEDSSKSKAWERNSDNV----------------KVGN 681
                   + V+ D+         Q+D+S   AW  NS +                 KVGN
Sbjct: 1544 EIPAGGSANVQNDSWGLGKLNDTQKDNSGCGAWGENSGSAWPQEDAWNSGNWKAESKVGN 1603

Query: 682  SSWGKPKFPETQAWDPQKETNQGAGSRGWDSQIASANSDSDRNFQWGKQGRESFKKSQGW 741
            ++WGKPK  E+ AWD   ++NQ + S+GW+S IASANS++++ FQWGK GR+S       
Sbjct: 1604 TTWGKPKSSESHAWDSHNQSNQNSSSQGWESHIASANSENEKGFQWGK-GRDS------- 1655

Query: 742  GSNAGDMKNKNRPGRAPGPRLDMYSSEEQDILKDIEPIVQSIRRIMQ 788
                      NRP RAPG RLD+YSSEEQD+LKDIEPI+QSIRRIMQ
Sbjct: 1656 ----------NRPPRAPGQRLDIYSSEEQDVLKDIEPIMQSIRRIMQ 1692


>Glyma01g42480.1 
          Length = 1376

 Score =  106 bits (265), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 7/225 (3%)

Query: 73   DVICPVLLGTIIQGDPRISSANITWINPDSNAWVRNPSKSSNGELALDIILEEAAVKQSG 132
            D++ P LLGT IQG   +   +I W N    + V N     +GEL L + L     +  G
Sbjct: 1010 DLVIPFLLGTAIQGFLDVKKVDILWNN---QSKVTNSRNGFSGELYLRVTLSSEGSR--G 1064

Query: 133  DAWRIVLDSCLPVLNLIDTRRSIPYAIKQVQELLGISCTFDQAIQRLAASVKMVAKGVLR 192
              W ++L  C  ++++ID  RS    I       GI   +      LA +     K +L 
Sbjct: 1065 RFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSILP 1124

Query: 193  EHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKKCFERAAEKCHTDS 252
            +HL L+A+S++C G  VG N  G     +  ++  PF  A    P  CF +AA+   TD+
Sbjct: 1125 KHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGATDN 1184

Query: 253  LSSIVASCSWGKPVAVGTGSRFDVLWDAKERKSNELEGMDVYNFL 297
            L   +   +WG  +++GT   FDV++   E+     + +DVY  L
Sbjct: 1185 LQGSLDGLAWGNCLSMGTSGMFDVIYS--EKGHQVAKSVDVYELL 1227


>Glyma03g16500.1 
          Length = 166

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 55/125 (44%), Positives = 72/125 (57%), Gaps = 24/125 (19%)

Query: 43  SCASPNFSSPCVTFISLDGDG-LDKTTEILADVICPVLLGTIIQGDPRISSANITWINPD 101
           SC+  +  +PC+ F   + D  LD   ++LA+ I  VL  TIIQG+ +            
Sbjct: 1   SCSYSHLVAPCLIFWLKNHDSDLDNAVKVLAEKIFLVLFETIIQGEIQ------------ 48

Query: 102 SNAWVRNPSKSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRRSIPYAIKQ 161
                      ++G   L  +L + AVKQSGDAWR+VLDSCL V +LIDTR SIPYAIKQ
Sbjct: 49  -----------AHGSKTLINLLMKEAVKQSGDAWRVVLDSCLHVFHLIDTRCSIPYAIKQ 97

Query: 162 VQELL 166
           +QELL
Sbjct: 98  IQELL 102


>Glyma10g24210.1 
          Length = 129

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 38/43 (88%)

Query: 111 KSSNGELALDIILEEAAVKQSGDAWRIVLDSCLPVLNLIDTRR 153
           KSSN ELALDIILEE +VKQSGDAWR+VLDSCL VL+LI+  R
Sbjct: 66  KSSNVELALDIILEEESVKQSGDAWRVVLDSCLSVLHLIECLR 108