Miyakogusa Predicted Gene

Lj0g3v0352669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0352669.1 tr|G8A389|G8A389_MEDTR tRNA modification GTPase
mnmE OS=Medicago truncatula GN=MTR_146s0004 PE=3
SV=,81.75,0,GTP-BINDING PROTEIN ERA HOMOLOG (HERA)(ERA-W)(CONSERVED
ERA-LIKE GTPASE)(CEGA),NULL; MSS1/TRME-RELAT,CUFF.24265.1
         (546 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g11560.1                                                       863   0.0  
Glyma06g11130.1                                                       693   0.0  
Glyma12g06150.1                                                        83   7e-16
Glyma01g41360.1                                                        81   4e-15
Glyma11g14170.1                                                        70   5e-12
Glyma07g40160.1                                                        62   2e-09
Glyma11g30440.1                                                        59   1e-08
Glyma17g00640.1                                                        58   2e-08
Glyma16g24870.1                                                        54   4e-07

>Glyma04g11560.1 
          Length = 587

 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/549 (81%), Positives = 472/549 (85%), Gaps = 18/549 (3%)

Query: 1   MASLRVVFRHIHINMNHCYSTSPR-PMGGLLLHRRDTWRRRCNSVKPRACSDNHHRSYRV 59
           MA+ R V RHIHI+   C++  PR P   L   +   W      +K RA S+N++    +
Sbjct: 51  MAAFRGVLRHIHISTFSCFTPPPRIPTMALFSSQGAMWH-----LKSRAGSENYNN---L 102

Query: 60  VLNKDERLG--ERVGHNNTTELGNSTTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRV 117
           VL KDERLG  E VG     E+G S TTIAAIVTS+GGPPAAVGIVRLSGP AVSIAGRV
Sbjct: 103 VLKKDERLGAGECVG-----EVG-SGTTIAAIVTSVGGPPAAVGIVRLSGPGAVSIAGRV 156

Query: 118 FRPGRSTWRPTSHVVEYGVVFDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLR 177
           FRP R TWRPTSHVVEYGVV DSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLR
Sbjct: 157 FRPARKTWRPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLR 216

Query: 178 RVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENXXXXXXXXXXXXXXXXXXGIQGGF 237
           RVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAEN                  GIQGGF
Sbjct: 217 RVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALEGIQGGF 276

Query: 238 SSLVRSLRIQCIELLTEIEARLDFDDEMPPLNLNQIMEKIHNMSRDVENALETANYDKLL 297
           SSLVRSLR QCIELLTEIEARLDFDDEMPPL+LN IM+KIHNMSR+VENALETANYDKLL
Sbjct: 277 SSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHNMSREVENALETANYDKLL 336

Query: 298 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVNGIPITLLDTAG 357
           QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISV+GIPITLLDTAG
Sbjct: 337 QSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAG 396

Query: 358 IRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGSSTPA 417
           IRDTDDIVEKIGVERSEAVARGADLIIMT+SAVEGWT+EDTKLLERIQSTK STGSSTP 
Sbjct: 397 IRDTDDIVEKIGVERSEAVARGADLIIMTMSAVEGWTSEDTKLLERIQSTKGSTGSSTPV 456

Query: 418 ILVVNKIDCKPCAETEWDKGCHGHNFFSKSVFTCAVTGQGLQDLESTVLEMVGLDVVPAG 477
           ILVVNKIDCKPCAETEWDKGC  H  FSK VFTCAVTGQGL DLE  VL++VGL+ +PAG
Sbjct: 457 ILVVNKIDCKPCAETEWDKGCQNH-IFSKHVFTCAVTGQGLHDLEGAVLQIVGLEGIPAG 515

Query: 478 GRRWTVNQRQCEQLVRTKEALSRLQSSIREELPLDFWTIDLKDAAMSLGQINGEDISEEV 537
           GRRWTVNQRQCEQLVRTKEAL RLQSSI++ELPLDFWTIDL+DAA+SLGQI+GEDISEEV
Sbjct: 516 GRRWTVNQRQCEQLVRTKEALVRLQSSIKDELPLDFWTIDLRDAALSLGQISGEDISEEV 575

Query: 538 LSNIFGKFC 546
           LSNIFGKFC
Sbjct: 576 LSNIFGKFC 584


>Glyma06g11130.1 
          Length = 398

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/396 (87%), Positives = 362/396 (91%), Gaps = 3/396 (0%)

Query: 153 MLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAE 212
           MLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAE
Sbjct: 1   MLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAE 60

Query: 213 NXXXXXXXXXXXXXXXXXXGIQ--GGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLNL 270
           N                  GIQ  GGFSSLVRSLR QCIELLTEIEARLDFDDEMPPL+L
Sbjct: 61  NVARLIAAKSVAAADAALEGIQACGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDL 120

Query: 271 NQIMEKIHNMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTE 330
           N  M+KIHNMSR+VENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTE
Sbjct: 121 NLTMDKIHNMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTE 180

Query: 331 IAGTTRDVIEASISVNGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAV 390
           IAGTTRDVIEASISV+GIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAV
Sbjct: 181 IAGTTRDVIEASISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAV 240

Query: 391 EGWTAEDTKLLERIQSTKESTGSSTPAILVVNKIDCKPCAETEWDKGCHGHNFFSKSVFT 450
           EGWT+EDTKLLERIQSTK STGSSTP ILVVNKIDCKPCAET+WDKGC  H  FSK VFT
Sbjct: 241 EGWTSEDTKLLERIQSTKGSTGSSTPVILVVNKIDCKPCAETKWDKGCQSH-IFSKRVFT 299

Query: 451 CAVTGQGLQDLESTVLEMVGLDVVPAGGRRWTVNQRQCEQLVRTKEALSRLQSSIREELP 510
           CAVTGQGL DLE  VL++VGL+ +PAGGRRWTVNQRQCEQLVRTKEAL+RLQSSI+EELP
Sbjct: 300 CAVTGQGLHDLERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKEELP 359

Query: 511 LDFWTIDLKDAAMSLGQINGEDISEEVLSNIFGKFC 546
           LDFWTIDL+DAA+SLGQI+GEDISEEVLSNIFGKFC
Sbjct: 360 LDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFC 395


>Glyma12g06150.1 
          Length = 632

 Score = 83.2 bits (204), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 13/133 (9%)

Query: 303 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASIS-VNGIPITLLDTAGIRDT 361
           I+IVGRPNVGKSS+LNA    +R IV+ I+GTTRD I+   +  +G    L+DTAGIR  
Sbjct: 339 ISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPDGQKFQLIDTAGIRKR 398

Query: 362 DDIV------EKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGSST 415
             I       E + V R+    R +D++ + + A+   T +D K+ ERI+  KE  G   
Sbjct: 399 TAIASAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDYKIAERIE--KEGKG--- 453

Query: 416 PAILVVNKIDCKP 428
             ++VVNK D  P
Sbjct: 454 -CVIVVNKWDTIP 465


>Glyma01g41360.1 
          Length = 112

 Score = 80.9 bits (198), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/117 (46%), Positives = 67/117 (57%), Gaps = 7/117 (5%)

Query: 1   MASLRVVFRHIHINMNHCYSTSPRPMGGLLLHRRDTWRRRCNSVKPRACSDNHHRS--YR 58
           M + R +  HIHI+    ++  P     L L    TW  R  S KP     +H  S  Y 
Sbjct: 1   MDAFRAMLLHIHISTFSYFTPPPCTPMALFLSHGATWHCRIPS-KPSRTVKSHAGSENYN 59

Query: 59  VVLNKDERLGERVGHNNTTELGNSTTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAG 115
           +VL KD+ LG+       +E+G S TTIAA+VTS+GGPPAAVGIVRLS P AVSI G
Sbjct: 60  LVLKKDKCLGDE---ECVSEVG-SGTTIAAVVTSMGGPPAAVGIVRLSRPGAVSIVG 112


>Glyma11g14170.1 
          Length = 430

 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 11/127 (8%)

Query: 303 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASIS-VNGIPITLLDTAGIRDT 361
           I+IVGRPNVGKSS+LNA    +R IV+ I+ TTRD I+   +  +G    L+DTAGIR  
Sbjct: 187 ISIVGRPNVGKSSILNALVGEDRTIVSPISCTTRDAIDTEFTGPDGQKFQLIDTAGIRKR 246

Query: 362 DDIVEKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGSSTPAILVV 421
             I        +    R +D++ + + A+   T ++  + ERI+  KE  G     ++VV
Sbjct: 247 SAIASA----GTFCAIRRSDVVALVIEAMACITEQEYNIAERIE--KEGKG----CVIVV 296

Query: 422 NKIDCKP 428
           NK D  P
Sbjct: 297 NKWDTIP 303


>Glyma07g40160.1 
          Length = 545

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 38/57 (66%)

Query: 301 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVNGIPITLLDTAG 357
           LQ+AIVGRPNVGKS+LLNA  + +R +V   AG TRD I       G  I L+DTAG
Sbjct: 248 LQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSIRTQFEFQGRTIYLVDTAG 304


>Glyma11g30440.1 
          Length = 227

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 7/97 (7%)

Query: 301 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASIS-VNGIPITLLDTAGIR 359
           L I+IVGRPNV KS++LNA    +R I + I+GTTRD I+   +  +G    L+DTAGI+
Sbjct: 94  LAISIVGRPNVAKSTILNALVGEDRTIGSPISGTTRDAIDTEFTGPDGQKFQLIDTAGIK 153

Query: 360 DTDDI------VEKIGVERSEAVARGADLIIMTVSAV 390
               I       E + V R+       D++++ + A+
Sbjct: 154 KITTIASAGITTEALSVNRAFRAICRFDVVVLVIEAM 190


>Glyma17g00640.1 
          Length = 308

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 37/57 (64%)

Query: 301 LQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVNGIPITLLDTAG 357
           LQ+AI+GRPNVGKS+LLNA  + +  +V   AG TRD I       G  I L+DTAG
Sbjct: 26  LQLAILGRPNVGKSTLLNALLQEDHVLVGPEAGLTRDSIRTQFEFQGRTIYLVDTAG 82


>Glyma16g24870.1 
          Length = 428

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 303 IAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVNGIPITLLDTAGIRDTD 362
           +A++G+PNVGKS+L N     + +IVT+   TTR  I    S     + L DT G+   +
Sbjct: 133 VALLGKPNVGKSTLANQMLGQKLSIVTDKPQTTRHRILCICSGTDYQMILYDTPGVLQKE 192

Query: 363 -DIVEKIGVERSEAVARGADLIIMTVSAVEGWTAEDTKLLERIQSTKESTGSSTPAILVV 421
             +++ + ++   + A  AD +++ V A +     D  L E I   K+      P +L++
Sbjct: 193 MHLLDSMMMKNVRSAAVNADCVLVLVDARKTPEKIDGLLEEGIGDLKD----KPPTLLIL 248

Query: 422 NKID-CKP---CAETEWDKGCHGHNFFSKSVFTCAVTGQGLQDLESTVL 466
           NK D  KP     + EW           + +   A  GQG++D++  +L
Sbjct: 249 NKKDLVKPGELAKKLEW---YEKFTEVDEVIPVSAKYGQGVEDVKDWIL 294