Miyakogusa Predicted Gene

Lj0g3v0351909.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0351909.1 tr|I7KMR5|I7KMR5_MARPO NDH subunit PnsB4
OS=Marchantia polymorpha GN=pnsb4 PE=4 SV=1,48.28,6e-18,seg,NULL;
coiled-coil,NULL,CUFF.24202.1
         (186 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g20990.1                                                       269   1e-72
Glyma04g33290.1                                                       268   2e-72

>Glyma06g20990.1 
          Length = 183

 Score =  269 bits (687), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/182 (71%), Positives = 141/182 (77%), Gaps = 1/182 (0%)

Query: 1   MAEAIMGFTVFKSHIHCSCLQTKRFDVNPSSRLPKLHSNSTLFHRSWQVFESKC-KRASL 59
           MAE+I+GFT+FKSH   SCLQTK+F VN SSRLPK HS STLF+R WQV E K  KR SL
Sbjct: 1   MAESILGFTLFKSHTLSSCLQTKKFQVNHSSRLPKQHSKSTLFNRPWQVLEGKSEKRGSL 60

Query: 60  CKVNALPDWPLMAILVEQMEGQRDMITEKTIWHLSDGQIKNVYSWYIMFTVWGCLVFGSM 119
           CKVN LPDWPLMAI+VEQMEGQRD+ITEKT+ HLSD  IKNVYSWYIMFTVWGCL FG+M
Sbjct: 61  CKVNGLPDWPLMAIIVEQMEGQRDLITEKTVSHLSDRAIKNVYSWYIMFTVWGCLFFGAM 120

Query: 120 KDPYYDSETYRGDGGDGTGNWIYEKQEIMXXXXXXXXXXXXXXXXXXQKVGGLKELEEVS 179
           KDPYYDSETYRGDGGDGTGNWIYEKQ+ M                  QKV GL+ELEE  
Sbjct: 121 KDPYYDSETYRGDGGDGTGNWIYEKQDAMEAEAREALWREELIEEIEQKVEGLRELEEAG 180

Query: 180 TK 181
            K
Sbjct: 181 KK 182


>Glyma04g33290.1 
          Length = 203

 Score =  268 bits (685), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 130/182 (71%), Positives = 139/182 (76%), Gaps = 1/182 (0%)

Query: 1   MAEAIMGFTVFKSHIHCSCLQTKRFDVNPSSRLPKLHSNSTLFHRSWQVFESKCK-RASL 59
           MAEAIMGFT FKSH   SCLQT +F VN SSRLPK HSNS+L +R WQV E K K R SL
Sbjct: 21  MAEAIMGFTPFKSHTLSSCLQTNKFQVNQSSRLPKQHSNSSLINRPWQVLEGKSKKRGSL 80

Query: 60  CKVNALPDWPLMAILVEQMEGQRDMITEKTIWHLSDGQIKNVYSWYIMFTVWGCLVFGSM 119
           CKVN LPDWPLMAI+VEQMEGQRD+ITEKT+ HLSD  IKNVYSWYIMFTVWGCL FG+M
Sbjct: 81  CKVNGLPDWPLMAIIVEQMEGQRDLITEKTVSHLSDQAIKNVYSWYIMFTVWGCLFFGAM 140

Query: 120 KDPYYDSETYRGDGGDGTGNWIYEKQEIMXXXXXXXXXXXXXXXXXXQKVGGLKELEEVS 179
           KDPYYDSETYRGDGGDGTGNWIYEKQ+ M                  QKV GL+ELEE  
Sbjct: 141 KDPYYDSETYRGDGGDGTGNWIYEKQDAMEAEAREALWREELIEEIEQKVEGLRELEEAG 200

Query: 180 TK 181
            K
Sbjct: 201 KK 202