Miyakogusa Predicted Gene

Lj0g3v0347529.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0347529.2 tr|Q2HVD7|Q2HVD7_MEDTR Nucleic acid-binding,
OB-fold, subgroup OS=Medicago truncatula GN=MtrDRAFT_AC,40.6,1e-18,no
description,Nucleic acid-binding, OB-fold; seg,NULL; DUF223,Domain of
unknown function DUF223,CUFF.23853.2
         (228 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g33200.1                                                        74   1e-13
Glyma11g27090.1                                                        55   8e-08
Glyma15g22420.1                                                        48   1e-05

>Glyma18g33200.1 
          Length = 126

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 67/111 (60%), Gaps = 9/111 (8%)

Query: 18  LVKVIRAW------KGQRLSGRKLAFTLEVVLMDNK---IHATIREGLIYRFERVLKEGH 68
           +V+V+  W        ++ S  K+  ++E+VL+D+K   +H ++++  IY+F++ L+EG 
Sbjct: 1   MVRVVHLWMVSDVSNNKQTSSSKIPLSMEMVLVDSKGDRVHGSVKQTFIYKFDKALQEGK 60

Query: 69  VYAITNFEVSFNAGPFMTDKHEFKINFQMNIEVKPMNKASITIETYTFVPL 119
            Y+I  F V+ N G + T  H++KI FQ + +V  ++ ASI    Y FVP+
Sbjct: 61  WYSIQFFGVAENGGIYRTTHHKYKIVFQYSTKVALVDNASIPNSMYDFVPI 111


>Glyma11g27090.1 
          Length = 206

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 7/93 (7%)

Query: 6  ASISRAKETWRILVKVIRAWKGQRLSGRKLAFTLEVVLMD---NKIHATIREGLIYRFER 62
          A I   KET +I+V+VI  W   R S + +   +E++L+D   +KI A +R   +     
Sbjct: 5  AEIDDQKETCKIIVRVINMWTIPR-SPKSI---VELILVDKKGDKILAQMRNVDVQLDNV 60

Query: 63 VLKEGHVYAITNFEVSFNAGPFMTDKHEFKINF 95
          +   GH Y I NFEV  N+G +   +H FKINF
Sbjct: 61 IFDVGHTYVIKNFEVEKNSGHYKATRHGFKINF 93


>Glyma15g22420.1 
          Length = 149

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 7/72 (9%)

Query: 31  SGRKLAFTLEVVLMDNKIHATIREGLIYRFERVLKEGHVYAITNFEVSFNAGPFMTDKHE 90
           S  KL+F++E+V +D+K+       L       LKEG VY+I  F ++ N G + T  H+
Sbjct: 4   STPKLSFSMEIVFVDSKV-------LFCLLVSTLKEGKVYSIQFFRIAENGGIYRTSHHK 56

Query: 91  FKINFQMNIEVK 102
           +KI+FQ + + +
Sbjct: 57  YKISFQYSTKSR 68