Miyakogusa Predicted Gene

Lj0g3v0347529.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0347529.1 tr|G7L8V5|G7L8V5_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_8g088810 PE=4
SV=1,44.17,5e-18,seg,NULL; DUF223,Domain of unknown function
DUF223,CUFF.23853.1
         (145 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g33200.1                                                        64   4e-11

>Glyma18g33200.1 
          Length = 126

 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 48/75 (64%)

Query: 5   GCKIHATIREGLIYRFERVLKEGHVYAITNFEVSFNAGPFMTDKHEFKINFQMNIEVKPM 64
           G ++H ++++  IY+F++ L+EG  Y+I  F V+ N G + T  H++KI FQ + +V  +
Sbjct: 37  GDRVHGSVKQTFIYKFDKALQEGKWYSIQFFGVAENGGIYRTTHHKYKIVFQYSTKVALV 96

Query: 65  NKASITIETYTFVPL 79
           + ASI    Y FVP+
Sbjct: 97  DNASIPNSMYDFVPI 111