Miyakogusa Predicted Gene

Lj0g3v0346989.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0346989.2 Non Chatacterized Hit- tr|C6THR5|C6THR5_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2 S,68.25,7e-16,
,CUFF.23812.2
         (74 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g19390.1                                                        91   3e-19
Glyma17g09750.1                                                        57   6e-09
Glyma05g02180.3                                                        47   5e-06
Glyma05g02180.4                                                        47   5e-06

>Glyma06g19390.1 
          Length = 459

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 52/63 (82%)

Query: 1   MAMVQRGEKPANIRDINDLPPNPSQEPSNPLLMPRSKPWEVGQVQNTSTQVLQPQQNGED 60
           MAM+QRGEKP+NIR+I+D  PNP Q+PSNP L PR+KPWEV QVQNTSTQVL  Q NG+ 
Sbjct: 326 MAMIQRGEKPSNIREIDDSAPNPYQQPSNPRLAPRAKPWEVSQVQNTSTQVLPYQVNGKI 385

Query: 61  LNN 63
            +N
Sbjct: 386 QDN 388


>Glyma17g09750.1 
          Length = 500

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 40/74 (54%), Gaps = 24/74 (32%)

Query: 1   MAMVQRGEKPANIRDINDLPPNPSQEPSNPLLMPRSKPWEVGQVQNTSTQVLQPQQNGED 60
           MAMVQRGEK +NIR                       PWEV QVQ+TSTQ+LQ Q NGED
Sbjct: 327 MAMVQRGEKSSNIR-----------------------PWEVSQVQSTSTQMLQSQVNGED 363

Query: 61  LNNIKVQEATQSNG 74
           LN  K Q+    NG
Sbjct: 364 LNT-KAQDTPLVNG 376


>Glyma05g02180.3 
          Length = 500

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 33/63 (52%), Gaps = 23/63 (36%)

Query: 1   MAMVQRGEKPANIRDINDLPPNPSQEPSNPLLMPRSKPWEVGQVQNTSTQVLQPQQNGED 60
           MAMVQRGEK +NI                       K  EV QVQ+TSTQ+LQ Q NGED
Sbjct: 323 MAMVQRGEKSSNI-----------------------KHREVSQVQSTSTQMLQSQVNGED 359

Query: 61  LNN 63
           LN 
Sbjct: 360 LNT 362


>Glyma05g02180.4 
          Length = 501

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 33/63 (52%), Gaps = 23/63 (36%)

Query: 1   MAMVQRGEKPANIRDINDLPPNPSQEPSNPLLMPRSKPWEVGQVQNTSTQVLQPQQNGED 60
           MAMVQRGEK +NI                       K  EV QVQ+TSTQ+LQ Q NGED
Sbjct: 324 MAMVQRGEKSSNI-----------------------KHREVSQVQSTSTQMLQSQVNGED 360

Query: 61  LNN 63
           LN 
Sbjct: 361 LNT 363