Miyakogusa Predicted Gene

Lj0g3v0346989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0346989.1 tr|G7JNV8|G7JNV8_MEDTR Peroxisomal membrane
protein PEX14 OS=Medicago truncatula GN=MTR_4g106880
PE=,52.7,0.0000000009, ,CUFF.23812.1
         (51 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g09750.1                                                        69   8e-13
Glyma05g02180.4                                                        58   2e-09
Glyma05g02180.3                                                        58   2e-09
Glyma06g19390.1                                                        49   9e-07

>Glyma17g09750.1 
          Length = 500

 Score = 69.3 bits (168), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 40/51 (78%), Gaps = 1/51 (1%)

Query: 1   MAMVQRGEKPANIRPWEVGQVQNTSTQVLQPQQNGEDLNNIKVQEATQSNG 51
           MAMVQRGEK +NIRPWEV QVQ+TSTQ+LQ Q NGEDLN  K Q+    NG
Sbjct: 327 MAMVQRGEKSSNIRPWEVSQVQSTSTQMLQSQVNGEDLNT-KAQDTPLVNG 376


>Glyma05g02180.4 
          Length = 501

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 38/51 (74%), Gaps = 1/51 (1%)

Query: 1   MAMVQRGEKPANIRPWEVGQVQNTSTQVLQPQQNGEDLNNIKVQEATQSNG 51
           MAMVQRGEK +NI+  EV QVQ+TSTQ+LQ Q NGEDLN  K  +A   NG
Sbjct: 324 MAMVQRGEKSSNIKHREVSQVQSTSTQMLQSQVNGEDLNT-KALDAPLLNG 373


>Glyma05g02180.3 
          Length = 500

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 38/51 (74%), Gaps = 1/51 (1%)

Query: 1   MAMVQRGEKPANIRPWEVGQVQNTSTQVLQPQQNGEDLNNIKVQEATQSNG 51
           MAMVQRGEK +NI+  EV QVQ+TSTQ+LQ Q NGEDLN  K  +A   NG
Sbjct: 323 MAMVQRGEKSSNIKHREVSQVQSTSTQMLQSQVNGEDLNT-KALDAPLLNG 372


>Glyma06g19390.1 
          Length = 459

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 34/63 (53%), Gaps = 23/63 (36%)

Query: 1   MAMVQRGEKPANIR-----------------------PWEVGQVQNTSTQVLQPQQNGED 37
           MAM+QRGEKP+NIR                       PWEV QVQNTSTQVL  Q NG+ 
Sbjct: 326 MAMIQRGEKPSNIREIDDSAPNPYQQPSNPRLAPRAKPWEVSQVQNTSTQVLPYQVNGKI 385

Query: 38  LNN 40
            +N
Sbjct: 386 QDN 388