Miyakogusa Predicted Gene

Lj0g3v0343559.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0343559.1 tr|Q6IDC0|Q6IDC0_ARATH At3g45900 OS=Arabidopsis
thaliana GN=At3g45900 PE=2 SV=1,34.65,2e-17,coiled-coil,NULL; GB DEF:
EMB|CAB82814.1,NULL; RIBONUCLEASE P PROTEIN SUBUNIT
P38-RELATED,NULL,NODE_11030_length_2668_cov_66.770988.path2.1
         (414 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g41340.1                                                       625   e-179
Glyma06g13510.1                                                       563   e-160
Glyma04g14680.1                                                       115   1e-25
Glyma09g34790.1                                                       112   7e-25
Glyma15g34410.1                                                        89   1e-17

>Glyma04g41340.1 
          Length = 800

 Score =  625 bits (1613), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 315/415 (75%), Positives = 357/415 (86%), Gaps = 10/415 (2%)

Query: 1   MRAEAERYATLIEQRHHLELDAFAEQMQLKDEKLEAFRWQLLRTELETKQLQSHLEGLVK 60
           +RAEAERYATLIEQRHHLELDAFAEQM+LKDEKLEAFRWQLLRTELE KQ+Q+H+EGLVK
Sbjct: 395 VRAEAERYATLIEQRHHLELDAFAEQMRLKDEKLEAFRWQLLRTELEMKQMQAHVEGLVK 454

Query: 61  DVKQLRHDKMKLESLMFEKEDELASLKEQVASKLRPLNCFRNNSNLLQQSSELAQDAVWS 120
           DV QLRHDKM+LE+L+ E+EDEL SLKEQ  SKLRPL   +NNSNL  QS E+AQ+AVWS
Sbjct: 455 DVTQLRHDKMRLETLLLEREDELTSLKEQFVSKLRPL---KNNSNLPPQSLEIAQEAVWS 511

Query: 121 GVKVIKKKPGEKEIQMMETLIEEDCEKEAQHLPHDEFNNVDLLAQSPENNVEEEKDVPRE 180
            VKV+K+KPGEK ++ METL+EEDCEKE Q  PHD+ N  +LL QSPE  +EEEK + RE
Sbjct: 512 RVKVVKRKPGEKVLETMETLVEEDCEKEVQCQPHDQVNGANLLVQSPETEIEEEKSISRE 571

Query: 181 DSPI-PIQNLRPNQVQVVDAAEKIGSTTCTSFNKTKQSPWKMDLHALGVSYKIKRLKQQL 239
           DSP  P+QN  P++V+  DA+EKI ST+ T  + TK+S  KMDLHALG+SYKIKRLKQQL
Sbjct: 572 DSPTTPMQNQSPSKVEA-DASEKIASTSQT-LSTTKKSLGKMDLHALGISYKIKRLKQQL 629

Query: 240 VLVERLTGMQSNGENSEISDDSKGGMKAFLSLTTLLNKQVGRYQSLQEKTDDLCKRMQGN 299
           VLVERLTG Q+N E++EI+DDSK GMKA+LSLTTLLNKQVGRYQSLQEKTDDLCKRM  N
Sbjct: 630 VLVERLTGRQANDEHAEITDDSKVGMKAYLSLTTLLNKQVGRYQSLQEKTDDLCKRMHEN 689

Query: 300 ELYTNVGEMNGARAKEKTSTLEHFLEETFQLQRYIVATGQKLMEVQTKIVPGFVGVVVEE 359
           +LY N G+++ ARAKEKTSTLEHFLEETFQLQRYIVATGQKLME+Q+KI+ GFVG V EE
Sbjct: 690 DLYANRGDVSAARAKEKTSTLEHFLEETFQLQRYIVATGQKLMEIQSKILSGFVG-VAEE 748

Query: 360 MDNKSAAAGIDMKRFADSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMICLRR 414
           M   S   GIDM RFADSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGM CLRR
Sbjct: 749 MGKSS---GIDMNRFADSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMTCLRR 800


>Glyma06g13510.1 
          Length = 684

 Score =  563 bits (1451), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 293/414 (70%), Positives = 327/414 (78%), Gaps = 49/414 (11%)

Query: 1   MRAEAERYATLIEQRHHLELDAFAEQMQLKDEKLEAFRWQLLRTELETKQLQSHLEGLVK 60
           +RAEAERYATLIEQRHHLELDAFAEQ++LKDEKLEAFRWQLLRTELE KQ+++H+EG VK
Sbjct: 320 VRAEAERYATLIEQRHHLELDAFAEQLRLKDEKLEAFRWQLLRTELEMKQMRAHVEGQVK 379

Query: 61  DVKQLRHDKMKLESLMFEKEDELASLKEQVASKLRPLNCFRNNSNLLQQSSELAQDAVWS 120
           DV QLRHDKM+LE+L+ E+EDEL SLKEQ  SKLRPL   +NNSNL  QSSELAQ AVWS
Sbjct: 380 DVTQLRHDKMRLETLLLEREDELTSLKEQFVSKLRPL---KNNSNLPPQSSELAQYAVWS 436

Query: 121 GVKVIKKKPGEKEIQMMETLIEEDCEKEAQHLPHDEFNNVDLLAQSPENNVEEEKDVPRE 180
            VKV+K+KPGEK ++ METL+EEDCEKE                                
Sbjct: 437 RVKVVKRKPGEKVLETMETLVEEDCEKE-------------------------------- 464

Query: 181 DSPIPIQNLRPNQVQVVDAAEKIGSTTCTSFNKTKQSPWKMDLHALGVSYKIKRLKQQLV 240
                   + PN+V+  DA+EKI ST+ T  + TKQS WKMDLHALG+SYKIKRL QQLV
Sbjct: 465 --------VHPNKVEA-DASEKIASTSQT-LSTTKQSLWKMDLHALGISYKIKRLNQQLV 514

Query: 241 LVERLTGMQSNGENSEISDDSKGGMKAFLSLTTLLNKQVGRYQSLQEKTDDLCKRMQGNE 300
           LVERLTG Q+N E +EI+ DSK GMKA+LSLTTLLNKQVGRYQSLQEKTDDLCKRM  N+
Sbjct: 515 LVERLTGRQANDEQAEINYDSKVGMKAYLSLTTLLNKQVGRYQSLQEKTDDLCKRMHEND 574

Query: 301 LYTNVGEMNGARAKEKTSTLEHFLEETFQLQRYIVATGQKLMEVQTKIVPGFVGVVVEEM 360
           LY N G++N AR KEKTSTLEHFLEETFQLQRYIVATGQKLME+Q+KIV GFVG V EEM
Sbjct: 575 LYANRGDVNAAREKEKTSTLEHFLEETFQLQRYIVATGQKLMEIQSKIVSGFVG-VAEEM 633

Query: 361 DNKSAAAGIDMKRFADSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMICLRR 414
           +  S   GIDM RFADSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGM CLRR
Sbjct: 634 EKGS---GIDMNRFADSIRNLFHEVQRGLEVRTARIIGDLEGTLAREGMTCLRR 684


>Glyma04g14680.1 
          Length = 418

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 113/203 (55%), Gaps = 29/203 (14%)

Query: 211 FNKTKQSPWKMDLHALGVSYKIKRLKQQLVLVERLTGMQSNGENSEISDDSKGGMKAFLS 270
           F   ++SPWK+D  + GVS K+K L+Q L+ +E++      G+N    D SK        
Sbjct: 234 FVARRESPWKVDGDSAGVSSKLKLLEQDLLNLEKI------GKN----DPSK-------- 275

Query: 271 LTTLLNKQVGRYQSLQEKTDDLCKRMQGNELYTNVGEMNGARAKEKTSTLEHFLEETFQL 330
           + +L+ KQ  RYQ++ EK DDLC+R+  +    ++        + +T T   FL E F+L
Sbjct: 276 VPSLIKKQAKRYQAISEKIDDLCRRIANDPCEPSLS------TEFRTQTQTEFLLEAFRL 329

Query: 331 QRYIVATGQKLMEVQTKIVPGFVGVVVEEMDNKSAAAGIDMKRFADSIRNLFHEVQRGLE 390
           Q     TGQKLM +QT+I      +  +E+   +    +  +R  DSIRN F E+QR LE
Sbjct: 330 QLGASETGQKLMALQTEIGKSHY-IYRDELSETT----LTTRRSFDSIRNNFKEIQRNLE 384

Query: 391 VRTARIIGDLEGTLAREGMICLR 413
           +  ARIIGDLEG LAREG   +R
Sbjct: 385 IWLARIIGDLEGILAREGASRVR 407


>Glyma09g34790.1 
          Length = 405

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/203 (38%), Positives = 110/203 (54%), Gaps = 31/203 (15%)

Query: 211 FNKTKQSPWKMDLHALGVSYKIKRLKQQLVLVERLTGMQSNGENSEISDDSKGGMKAFLS 270
           F   ++SPWK+D  + GVS K+K L+Q L+ +E++      G+N      SK        
Sbjct: 223 FVARRESPWKVDGDSAGVSSKLKLLEQDLLNLEKI------GKN----HPSK-------- 264

Query: 271 LTTLLNKQVGRYQSLQEKTDDLCKRMQGNELYTNVGEMNGARAKEKTSTLEHFLEETFQL 330
           +++L+ KQ  RYQ++ EK DDLC+R+       ++        + +T T   FL E F+L
Sbjct: 265 VSSLIKKQAKRYQAISEKIDDLCRRIANEPCEPSLS------TEFRTQTQTEFLLEAFRL 318

Query: 331 QRYIVATGQKLMEVQTKIVPGFVGVVVEEMDNKSAAAGIDMKRFADSIRNLFHEVQRGLE 390
           Q+    TGQKLM +QT+I            D  S    I  +R  DSIRN F E+QR LE
Sbjct: 319 QQGASETGQKLMALQTEIGKSHY------RDELSETTPI-TRRSLDSIRNNFKEIQRNLE 371

Query: 391 VRTARIIGDLEGTLAREGMICLR 413
           +  ARIIGDLEG LAREG   +R
Sbjct: 372 IWLARIIGDLEGILAREGASRVR 394


>Glyma15g34410.1 
          Length = 178

 Score = 89.0 bits (219), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 61/91 (67%), Gaps = 14/91 (15%)

Query: 177 VPREDS-PIPIQNLRPNQVQVVDAAEKIGSTTCTSFNKTKQSPWKMDLHALGVSYKIKRL 235
           + R+DS   P+QN  P             ++T  + + TKQS WKMDLHALG+SYKIKRL
Sbjct: 33  ISRKDSLNTPMQNQTP-------------TSTNQTLSTTKQSLWKMDLHALGISYKIKRL 79

Query: 236 KQQLVLVERLTGMQSNGENSEISDDSKGGMK 266
           KQQLVLVERL G Q+N E +EI+DDSK G K
Sbjct: 80  KQQLVLVERLIGRQANDELAEITDDSKVGNK 110