Miyakogusa Predicted Gene

Lj0g3v0343459.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0343459.2 tr|G7JFP1|G7JFP1_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_4g009200 PE=3
SV=1,41.27,0.000000000000002,coiled-coil,NULL; seg,NULL,CUFF.23566.2
         (620 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g44630.1                                                        55   2e-07
Glyma15g00710.1                                                        53   8e-07

>Glyma13g44630.1 
          Length = 238

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 18/108 (16%)

Query: 454 DLKNQLVSLTSTVDKHRARNQSLKRMKVDVESRHSSELAAT-SLVSEKAVLNPPQLVEAQ 512
           +L+ +L SL  T+ KHRA N+S+KR+K+D ESR +S  AAT S VS KAV  P Q V++ 
Sbjct: 126 NLEKELASLRLTIQKHRATNESIKRLKLDFESRQNSSAAATASEVSGKAVNGPFQFVKS- 184

Query: 513 QPELVWPVECKEK---VLNDEPLVEAHQSEPVSTPSVEDKVPDGESLV 557
                   EC        +D P+  A+ S     P  +D + + ES  
Sbjct: 185 --------ECHPSNSVTHDDSPVCAANAS-----PKAQDNIGNRESTF 219


>Glyma15g00710.1 
          Length = 248

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 445 EKWLLEGITDLKNQLVSLTSTVDKHRARNQSLKRMKVDVESRHSSELAAT-SLVSEKAVL 503
           E  LL+   +LK +L  L  TV+KHRA N+S+KR K+D ESR +S  AAT S VS KAV 
Sbjct: 122 EDLLLKERRNLKKELAFLRLTVEKHRATNESIKRKKLDFESRQNSSAAATASEVSGKAVN 181

Query: 504 NPPQLVEAQ 512
              Q V+A+
Sbjct: 182 GSFQFVKAE 190