Miyakogusa Predicted Gene
- Lj0g3v0343459.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0343459.2 tr|G7JFP1|G7JFP1_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_4g009200 PE=3
SV=1,41.27,0.000000000000002,coiled-coil,NULL; seg,NULL,CUFF.23566.2
(620 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma13g44630.1 55 2e-07
Glyma15g00710.1 53 8e-07
>Glyma13g44630.1
Length = 238
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 58/108 (53%), Gaps = 18/108 (16%)
Query: 454 DLKNQLVSLTSTVDKHRARNQSLKRMKVDVESRHSSELAAT-SLVSEKAVLNPPQLVEAQ 512
+L+ +L SL T+ KHRA N+S+KR+K+D ESR +S AAT S VS KAV P Q V++
Sbjct: 126 NLEKELASLRLTIQKHRATNESIKRLKLDFESRQNSSAAATASEVSGKAVNGPFQFVKS- 184
Query: 513 QPELVWPVECKEK---VLNDEPLVEAHQSEPVSTPSVEDKVPDGESLV 557
EC +D P+ A+ S P +D + + ES
Sbjct: 185 --------ECHPSNSVTHDDSPVCAANAS-----PKAQDNIGNRESTF 219
>Glyma15g00710.1
Length = 248
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 445 EKWLLEGITDLKNQLVSLTSTVDKHRARNQSLKRMKVDVESRHSSELAAT-SLVSEKAVL 503
E LL+ +LK +L L TV+KHRA N+S+KR K+D ESR +S AAT S VS KAV
Sbjct: 122 EDLLLKERRNLKKELAFLRLTVEKHRATNESIKRKKLDFESRQNSSAAATASEVSGKAVN 181
Query: 504 NPPQLVEAQ 512
Q V+A+
Sbjct: 182 GSFQFVKAE 190