Miyakogusa Predicted Gene

Lj0g3v0343009.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0343009.1 tr|H3GSS2|H3GSS2_PHYRM tRNA pseudouridine
synthase OS=Phytophthora ramorum
GN=fgenesh1_pg.C_scaffold,34.04,0.000000000000002,PSEUDOURIDYLATE
SYNTHASE,Pseudouridine synthase I, TruA; no description,Pseudouridine
synthase I, Tr,CUFF.23514.1
         (507 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g36350.1                                                       787   0.0  
Glyma19g02100.1                                                       366   e-101
Glyma17g08330.1                                                       126   7e-29
Glyma0448s00210.1                                                      72   1e-12
Glyma02g39970.1                                                        71   3e-12
Glyma02g39980.1                                                        70   7e-12
Glyma08g03090.1                                                        56   1e-07

>Glyma02g36350.1 
          Length = 548

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/472 (81%), Positives = 418/472 (88%), Gaps = 11/472 (2%)

Query: 28  GTKIRPKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYD 87
           GTK R KRRK+AIFFAYCGVGYQGMQKNPGAKTIEGDLEEALY SGAVP+ DRG PKRYD
Sbjct: 42  GTKKRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYVSGAVPEQDRGVPKRYD 101

Query: 88  FARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNLNLPPQIRIFGFKRVTASYSAKKFCD 147
           +ARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLN NLP QIRIFG+KRVTAS++AKKFCD
Sbjct: 102 WARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFCD 161

Query: 148 RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVIGLVGNGKHNLEL 207
           RRRYVYLIPVFALDP CHRDRETV+ASLGS NELVKCL CSERGRKV+GLVGN K NLEL
Sbjct: 162 RRRYVYLIPVFALDPSCHRDRETVMASLGSGNELVKCLECSERGRKVVGLVGNRKQNLEL 221

Query: 208 EGVDVGAGLSSNRNDTLTSGVTEDAADPLSKG-HNQLNEELSNDNEGKVSADDMKTKTDL 266
           E VDV AG+SSNR+    SGVTED    LSKG  N LNEE  NDN+G      M  KT L
Sbjct: 222 EAVDVEAGISSNRD----SGVTEDVEVSLSKGDDNHLNEESGNDNKG-----GMNCKTGL 272

Query: 267 EAVVSGQDEGTPLSGGSVNNSGIIEEEKMNGEDEPNQGSRFCYGEKERERFNKILKYYVG 326
           E V+  Q+EGTPL+G SVNNS I+EEEK+NGED+P  GSRFCYGEKERERFNKILK +VG
Sbjct: 273 ETVIPVQEEGTPLNGESVNNSDILEEEKVNGEDKPTNGSRFCYGEKERERFNKILKCFVG 332

Query: 327 THNFHNFTTRIKPEDPAAQRFIISFDANTTVAIEGMEFVKCEVVGQSFMLHQIRKMTGLA 386
           THNFHNFTTR K EDPAA+R+IISF+ANTT+ +EG+EFVKCEVVGQSFMLHQIRKM GLA
Sbjct: 333 THNFHNFTTRTKAEDPAARRYIISFNANTTLVVEGVEFVKCEVVGQSFMLHQIRKMIGLA 392

Query: 387 VAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLYLDECFFTSYNDKWKDTHEEVSMKAYE 446
           VAIMR+CAPESLID+ALQ+DV+I VPTAPEVGLYLDECFFTSYN KWKD HEE+SMKAYE
Sbjct: 393 VAIMRNCAPESLIDEALQQDVNINVPTAPEVGLYLDECFFTSYNQKWKD-HEELSMKAYE 451

Query: 447 KEAEDFKMKYIYSHIASTEQKEGTVGLWLHSLNHRNYPDLRILDEEGITDNK 498
           KEA++FKMKYIYSHIASTEQKEGTV LWLHSLNHRNYPDLR+++EE I +NK
Sbjct: 452 KEADEFKMKYIYSHIASTEQKEGTVALWLHSLNHRNYPDLRVINEEAIPNNK 503


>Glyma19g02100.1 
          Length = 341

 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/211 (84%), Positives = 188/211 (89%), Gaps = 4/211 (1%)

Query: 28  GTKIRPKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPDNDRGYPKRYD 87
           GTK R KRRK+AIFFAYCGVGYQGMQKNPGAKTIEGDLEE LY SGAVP+ DRG PKRYD
Sbjct: 16  GTKKRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEVLYVSGAVPEQDRGVPKRYD 75

Query: 88  FARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNLNLPPQIRIFGFKRVTASYSAKKFCD 147
           +ARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLN NLP QIRIFG+KRVTAS++AKKFCD
Sbjct: 76  WARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFCD 135

Query: 148 RRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVIGLVGNGKHNLEL 207
           RRRYVYLIPVFALDP CHRDRETV+ASLGS NELVKCL CSERGRKVIGLVGN K NLEL
Sbjct: 136 RRRYVYLIPVFALDPSCHRDRETVMASLGSGNELVKCLECSERGRKVIGLVGNRKKNLEL 195

Query: 208 EGVDVGAGLSSNRNDTLTSGVTEDAADPLSK 238
           E VDV AG+SSNR+    SGVTED    LSK
Sbjct: 196 EAVDVEAGISSNRD----SGVTEDVEVSLSK 222



 Score =  150 bits (378), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 109/175 (62%), Gaps = 29/175 (16%)

Query: 341 DPAAQRFIISFDANTTVAI--EGMEFVKC--------EVVG------QSFMLHQIRKMTG 384
           DP+  R     D  T +A    G E VKC        +V+G      ++  L  +    G
Sbjct: 149 DPSCHR-----DRETVMASLGSGNELVKCLECSERGRKVIGLVGNRKKNLELEAVDVEAG 203

Query: 385 LAVAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLYLDECFFTSYNDKWKDTHEEVSMKA 444
           ++    RD      ++ +L KD+        +VGLYLDECFFTSYN KWKD HEE+SMKA
Sbjct: 204 ISSN--RDSGVTEDVEVSLSKDIL----EDEKVGLYLDECFFTSYNQKWKD-HEELSMKA 256

Query: 445 YEKEAEDFKMKYIYSHIASTEQKEGTVGLWLHSLNHRNYPDLRILD-EEGITDNK 498
           YEK+AE+FKMKYIYSHIASTEQKEGTV LWLHSLNHRNYPDL   D +E ITDNK
Sbjct: 257 YEKDAEEFKMKYIYSHIASTEQKEGTVALWLHSLNHRNYPDLHSADPKEAITDNK 311


>Glyma17g08330.1 
          Length = 564

 Score =  126 bits (316), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 81/122 (66%), Gaps = 25/122 (20%)

Query: 330 FHNFTTRIKPEDPAAQRFIISFDANTTVAIEGMEFVKCEVVGQSFMLHQIRKMTGLAVAI 389
            H     I+     A+R+IISF+A+TT+ +EGMEFVKCEV GQSFMLHQIR+M G+ VAI
Sbjct: 445 LHEVKEFIESALSRARRYIISFNASTTLVVEGMEFVKCEVGGQSFMLHQIREMIGMTVAI 504

Query: 390 MRDCAPESLIDKALQ---------------------KDVSIIVPTAPEVGLYLDECFFTS 428
           MR+C    ++DKALQ                     +DV+I +PTAPEVGLYLDECFFTS
Sbjct: 505 MRNC----VLDKALQHAILIGCNFLFFIFTFVFLNARDVNINLPTAPEVGLYLDECFFTS 560

Query: 429 YN 430
           YN
Sbjct: 561 YN 562


>Glyma0448s00210.1 
          Length = 499

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 16/136 (11%)

Query: 35  RRKIAIFFAYCGVGYQGMQKNPG---AKTIEGDLEEALYASGAVPDNDRGYPKRYDFARS 91
           ++K+ +   Y G  ++G+Q         TIE +LE A++ +G + D++ G   +  + RS
Sbjct: 73  KKKVVMRVGYVGTNFRGLQMQRDEHRLSTIEKELETAIFMAGGMRDSNFGDLNKVKWGRS 132

Query: 92  ARTDKGVSAVGQVVSGRFYIDPP-----------GLVDRLNLNLPPQIRIFGFKRVTASY 140
           +RTDKGV ++  +++  F ++ P            L +R+N  LP  IRIF     T  +
Sbjct: 133 SRTDKGVHSLATIIA--FKMEIPENAWKGDDYGIALANRINSYLPNTIRIFSILPSTKRF 190

Query: 141 SAKKFCDRRRYVYLIP 156
             ++ C+ R+Y YL+P
Sbjct: 191 DPRRECNLRKYSYLLP 206



 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 361 GMEFVKCEVVGQSFMLHQIRKMTGLAVAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLY 420
           G ++V+  V G SFMLHQIRKM G AVA+ R+  P   I  +L K   I+ P AP   L 
Sbjct: 344 GYDYVEVHVWGDSFMLHQIRKMVGTAVAVKRNLIPRDAILLSLSKFSRIVFPLAPPEVLI 403

Query: 421 LDECFFTSYNDKWKDTHEE-VSMKAYE---KEAEDFKMKYIYSHIAS-TEQKEGTVGLWL 475
           L    F         T +E VSM   E   K A++F    +   ++   +        W+
Sbjct: 404 LRGNAFKMRASAGNFTRQEMVSMVESEPILKAADEFYTSVVLPEVSKFLDSSSSPWAKWV 463

Query: 476 HSLN-HRNYPDLRILDE 491
            +L+ + + PD+  LDE
Sbjct: 464 ENLDKYSSIPDVE-LDE 479


>Glyma02g39970.1 
          Length = 494

 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 73/134 (54%), Gaps = 12/134 (8%)

Query: 35  RRKIAIFFAYCGVGYQGMQKNPG---AKTIEGDLEEALYASGAVPDNDRGYPKRYDFARS 91
           ++K+ +   Y G  ++G+Q         T+E +LE A++ +G + D++ G   +  + RS
Sbjct: 74  KKKVVMRVGYVGTDFRGLQMQRDEHRLSTVEKELETAIFTAGGMRDSNFGDLNKVKWGRS 133

Query: 92  ARTDKGVSAVGQVVSGRFYI-------DPPGLV--DRLNLNLPPQIRIFGFKRVTASYSA 142
           +RTDKGV ++  +++ +  I       D  G+V  +R+N  LP  IR+F     T  +  
Sbjct: 134 SRTDKGVHSLATMIAFKMEIPENAWKGDDYGIVLANRINSYLPNTIRVFSILPSTKRFDP 193

Query: 143 KKFCDRRRYVYLIP 156
           ++ C+ R+Y YL+P
Sbjct: 194 RRECNLRKYSYLLP 207



 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 42/147 (28%)

Query: 317 FNKILKYYVGTHNFHNFTTRIK-----------PEDPAAQRFIISFDANTTVAIE----- 360
           FN IL  + G H FHN+T R K           P + +    + S +++  V  +     
Sbjct: 229 FNSILNVFEGEHPFHNYTVRSKYRKKYQEESHKPPESSESNGLSSQNSSVVVRAKWLYEP 288

Query: 361 --------------------------GMEFVKCEVVGQSFMLHQIRKMTGLAVAIMRDCA 394
                                     G ++++  + G SFMLHQIRKM G AVA+ R+  
Sbjct: 289 DETDRLNASHFRKVFRCSCGKLETSLGYDYIEVHIWGDSFMLHQIRKMVGTAVAVKRNLI 348

Query: 395 PESLIDKALQKDVSIIVPTAPEVGLYL 421
           P   I  +L K   I++P AP   L L
Sbjct: 349 PRDAILLSLSKFSRIVLPLAPPEVLIL 375


>Glyma02g39980.1 
          Length = 425

 Score = 69.7 bits (169), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 12/130 (9%)

Query: 40  IFFAYCGVGYQGMQKNP---GAKTIEGDLEEALYASGAVPDNDRGYPKRYDFARSARTDK 96
           +  AY G  Y+G+Q         TIE +LE A++ +G + +++ G  ++  +ARS+RTDK
Sbjct: 1   MLVAYVGTNYRGLQMQHDEHSLSTIEKELETAIFKAGGIRESNFGDLQKIGWARSSRTDK 60

Query: 97  GVSAVGQVVSGRFYI-------DPP--GLVDRLNLNLPPQIRIFGFKRVTASYSAKKFCD 147
           GV ++  ++S +  I       DP   GL + +N  LP  I++        S+  +K C 
Sbjct: 61  GVHSLATIISFKMEIPENAWNGDPYGFGLANYVNSYLPFDIKVISILPSQRSFDPRKECI 120

Query: 148 RRRYVYLIPV 157
            R+Y YL+P 
Sbjct: 121 LRKYSYLLPA 130



 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%)

Query: 361 GMEFVKCEVVGQSFMLHQIRKMTGLAVAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLY 420
           G  +++  + G+SFMLHQIRKM G AVA+ R   P+ +I  +L +   II+P AP   L 
Sbjct: 267 GYNYIEISIQGESFMLHQIRKMVGTAVAVKRKALPKDIIKLSLTRFSRIILPLAPSEALI 326

Query: 421 L 421
           L
Sbjct: 327 L 327


>Glyma08g03090.1 
          Length = 423

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 17/138 (12%)

Query: 32  RPKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALYASGAVPD-------NDRGYPK 84
           R  R    I  +Y G  + G QK PG  T++  +E +L   G   D        D+G P 
Sbjct: 112 RWARTTFKIILSYHGGSFDGWQKQPGLNTVQSIVEGSL---GKFVDEKKTQLLKDKGLPI 168

Query: 85  RYDFARSARTDKGVSAVGQVVSGRFY-----IDPPGLVDRLNLNLPPQIRIFGFKRVTAS 139
                 + RTDKGV+ + QV S  FY     + P  + D +N   P ++R+     V+  
Sbjct: 169 EGCAIVAGRTDKGVTGLQQVCS--FYTWKKDVKPRDIEDAINHAAPGKLRVISVSEVSRV 226

Query: 140 YSAKKFCDRRRYVYLIPV 157
           +        RRY+Y+ P+
Sbjct: 227 FHPNFSAKWRRYLYIFPL 244