Miyakogusa Predicted Gene

Lj0g3v0342609.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0342609.1 Non Chatacterized Hit- tr|I1K4D0|I1K4D0_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,94.27,0,DNA
DAMAGE-BINDING PROTEIN 1 (DAMAGE-SPECIFIC DNA-BINDING PROTEIN
1)(UV-DAMAGED DNA-BINDING FACTOR),,CUFF.23486.1
         (157 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g30530.1                                                       325   9e-90
Glyma08g13680.1                                                       324   3e-89
Glyma12g08320.1                                                        83   1e-16
Glyma02g38780.1                                                        67   6e-12
Glyma20g38460.1                                                        52   2e-07
Glyma10g43750.1                                                        52   2e-07

>Glyma05g30530.1 
          Length = 1089

 Score =  325 bits (834), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 150/157 (95%), Positives = 155/157 (98%)

Query: 1   MSIWNYVVTAHKPTNVTHSCVGNFTGPQDLNLIVAKCTRIEIHLLSPQGLQPMLDVPIYG 60
           MSIWNYVVTAHKPTNVTHSCVGNFT PQDLNLI+AKCTRIEIHLLSPQGLQPMLDVPIYG
Sbjct: 1   MSIWNYVVTAHKPTNVTHSCVGNFTSPQDLNLIIAKCTRIEIHLLSPQGLQPMLDVPIYG 60

Query: 61  RIATLELFRPHGEAQDYLFVATKRYKFCVLQWDPETSELVTRAMGDVSDRIGRPTDNGQI 120
           RIATLELFRPHGEAQDYLF+AT+RYKFCVLQWD ET+ELVTRAMGDVSDRIGRPTDNGQI
Sbjct: 61  RIATLELFRPHGEAQDYLFIATERYKFCVLQWDSETAELVTRAMGDVSDRIGRPTDNGQI 120

Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFSIR 157
           GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAF+IR
Sbjct: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIR 157


>Glyma08g13680.1 
          Length = 1089

 Score =  324 bits (830), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 149/157 (94%), Positives = 154/157 (98%)

Query: 1   MSIWNYVVTAHKPTNVTHSCVGNFTGPQDLNLIVAKCTRIEIHLLSPQGLQPMLDVPIYG 60
           M+IWNYVVTAHKPTNVTHSCVGNFT PQDLNLI+AKCTRIEIHLLSPQGLQPMLDVPIYG
Sbjct: 1   MTIWNYVVTAHKPTNVTHSCVGNFTSPQDLNLIIAKCTRIEIHLLSPQGLQPMLDVPIYG 60

Query: 61  RIATLELFRPHGEAQDYLFVATKRYKFCVLQWDPETSELVTRAMGDVSDRIGRPTDNGQI 120
           RIATLELFRPHGEAQDYLF+AT+RYKFCVLQWD ET ELVTRAMGDVSDRIGRPTDNGQI
Sbjct: 61  RIATLELFRPHGEAQDYLFIATERYKFCVLQWDSETGELVTRAMGDVSDRIGRPTDNGQI 120

Query: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFSIR 157
           GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAF+IR
Sbjct: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIR 157


>Glyma12g08320.1 
          Length = 40

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/40 (87%), Positives = 38/40 (95%)

Query: 1  MSIWNYVVTAHKPTNVTHSCVGNFTGPQDLNLIVAKCTRI 40
          M+IWNYVVTAHKPTNVTHSCVGNFT P+DL LI+AKCTRI
Sbjct: 1  MTIWNYVVTAHKPTNVTHSCVGNFTSPRDLYLIIAKCTRI 40


>Glyma02g38780.1 
          Length = 33

 Score = 67.4 bits (163), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/31 (90%), Positives = 30/31 (96%)

Query: 72  GEAQDYLFVATKRYKFCVLQWDPETSELVTR 102
           GEAQDYLF+AT+RYKFCVLQWD ETSELVTR
Sbjct: 1   GEAQDYLFIATERYKFCVLQWDSETSELVTR 31


>Glyma20g38460.1 
          Length = 1214

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 25/162 (15%)

Query: 3   IWNYVVTAHKPTNVTHSCVGNFTGPQDLNLIVAKCTRIEIHLLSPQG---LQPMLDVPIY 59
           ++ Y +T  +PT +  +  GNF+G +   ++VA+   ++  LL P     +Q +L V I+
Sbjct: 1   MYLYSLTLQRPTGIICAINGNFSGGKSQEIVVARGKVLD--LLRPDDNGRIQTILSVEIF 58

Query: 60  GRIATLELFRPHGEAQDYLFVATKRYKFCVLQWDPETSELVTRAMGDVSDRIGRPTDN-- 117
           G I +L  FR  G  +DY+ V +   +  +L+++ E          +V D+I + T    
Sbjct: 59  GAIRSLAQFRLMGAQKDYIVVGSDSGRIVILEYNKEK---------NVFDKIHQETFGKS 109

Query: 118 -------GQIGIIDPDCR--LIGLHLYDGLFKVIPFDNKGQL 150
                  GQ   IDP  R  +IG      L  V+  D   +L
Sbjct: 110 GCRRIVPGQYLAIDPKGRAVMIGACEKQKLVYVLNRDTAARL 151


>Glyma10g43750.1 
          Length = 1214

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 13/156 (8%)

Query: 3   IWNYVVTAHKPTNVTHSCVGNFTGPQDLNLIVAKCTRIEIHLLSPQG---LQPMLDVPIY 59
           ++ Y +T  +PT +  +  GNF+G +   ++VA+   ++  LL P     +Q +L V I+
Sbjct: 1   MYLYSLTLQRPTGIICAINGNFSGGKSQEIVVARGKVLD--LLRPDDNGRIQTILSVEIF 58

Query: 60  GRIATLELFRPHGEAQDYLFVATKRYKFCVLQWDPETS---ELVTRAMGDVSDRIGRPTD 116
           G I +L  FR  G  +DY+ V +   +  +L+++ E +   ++     G    R   P  
Sbjct: 59  GAIRSLAQFRLMGAQKDYIVVGSDSGRIIILEYNKEKNVFDKIHQETFGKSGCRRIVP-- 116

Query: 117 NGQIGIIDPDCR--LIGLHLYDGLFKVIPFDNKGQL 150
            GQ   IDP  R  +IG      L  V+  D   +L
Sbjct: 117 -GQYLAIDPKGRAVMIGACEKQKLVYVLNRDTAARL 151