Miyakogusa Predicted Gene

Lj0g3v0342359.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0342359.2 tr|F2E9B9|F2E9B9_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,54.74,4e-19,coiled-coil,NULL; seg,NULL,CUFF.23459.2
         (98 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g23190.2                                                       119   6e-28
Glyma08g23190.1                                                        75   2e-14

>Glyma08g23190.2 
          Length = 254

 Score =  119 bits (299), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 57/98 (58%), Positives = 68/98 (69%)

Query: 1   MMTAVKMLFTEPPQKKKFGFDFHLVQFFFACMPSLAVYLVAQYARYDMXXXXXXXXXXXX 60
           M+TA K+LF++PP+K+KFGFDFHLVQFFFAC+PS+AVYLVAQYARY+M            
Sbjct: 60  MVTAAKILFSDPPKKRKFGFDFHLVQFFFACLPSVAVYLVAQYARYEMRKMEVEVEQKRK 119

Query: 61  XXXXXXXXXXXXXXXLNPPEEREAKSDPQLMEVKVRLE 98
                          LNPPEE+E KSDPQL +VKVRLE
Sbjct: 120 LKEEEEAKEKEKEMELNPPEEKEEKSDPQLAQVKVRLE 157


>Glyma08g23190.1 
          Length = 319

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 67/163 (41%), Gaps = 65/163 (39%)

Query: 1   MMTAVKMLFTEPPQKKKFGFDF-------------------------------------- 22
           M+TA K+LF++PP+K+KFG+ F                                      
Sbjct: 60  MVTAAKILFSDPPKKRKFGYPFSFPLTMFTLSPLALFRISSSTFAALNMSTSLPLFGSVF 119

Query: 23  --HL----VQFFFACMPSLAVYLVAQYARYDM---------------------XXXXXXX 55
             H+    +QFFFAC+PS+AVYLVAQYARY+M                            
Sbjct: 120 YYHIWSFKLQFFFACLPSVAVYLVAQYARYEMRKMEVDACDHRIPVHNLSIQFRALSKEV 179

Query: 56  XXXXXXXXXXXXXXXXXXXXLNPPEEREAKSDPQLMEVKVRLE 98
                               LNPPEE+E KSDPQL +VKVRLE
Sbjct: 180 EQKRKLKEEEEAKEKEKEMELNPPEEKEEKSDPQLAQVKVRLE 222