Miyakogusa Predicted Gene

Lj0g3v0341359.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0341359.2 tr|B9HCJ4|B9HCJ4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_762468 PE=4
SV=1,61.15,0,WD40,WD40 repeat; no description,WD40/YVTN
repeat-like-containing domain; WD40 repeat-like,WD40-repe,CUFF.23377.2
         (453 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g17470.1                                                       307   2e-83
Glyma08g15400.1                                                        54   3e-07
Glyma05g32110.1                                                        50   6e-06

>Glyma07g17470.1 
          Length = 822

 Score =  307 bits (786), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 156/233 (66%), Positives = 181/233 (77%), Gaps = 16/233 (6%)

Query: 220 AIAFSPESSISNDNCKRAGDCFHIYALTDSGILCLIRSGLTIQKSVALK---VQKAFALS 276
           + AFSP   +S         C HI  +     L  I S ++I   V++    VQKAFALS
Sbjct: 248 SFAFSPVHLVS---------CRHIKLI----FLLTITSTISIDFPVSVPIFHVQKAFALS 294

Query: 277 TSGKLIACACNNGEVQLFTPISLEYVGSILYSKAQKLYEENNSVYHALVLEQDFQQSPAL 336
           TS KLIACACNNG VQLFTPISLEY+GSI+YSK +K  EE+NSV H +V EQDF+Q PAL
Sbjct: 295 TSAKLIACACNNGIVQLFTPISLEYMGSIVYSKTKKFQEESNSVSHTIVPEQDFEQLPAL 354

Query: 337 PDAVACKFSATEKLVVIYRDHSLCIWDIHDVNQVTKCFMLVSHSSCIWDVKNLCCENMHD 396
           PDAVAC+FSA EK+VVIY DHSL I+DIHDVN+VTKCF+LVSHSSCIWD+KNLCCENMHD
Sbjct: 355 PDAVACQFSALEKIVVIYGDHSLYIYDIHDVNRVTKCFVLVSHSSCIWDIKNLCCENMHD 414

Query: 397 LSSVCTARGCSGGVSFATCSADGTIRLWDIATQSELSKNAEELKSELLGSSCL 449
            S  CTARGC GG+SFATCSADGT+R+WDIA QS+  K+AEELK+ELL SSCL
Sbjct: 415 PSLACTARGCLGGISFATCSADGTVRIWDIALQSDFLKDAEELKTELLSSSCL 467



 Score =  243 bits (620), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 147/219 (67%), Positives = 159/219 (72%), Gaps = 34/219 (15%)

Query: 17  LVLEEVIGLTTKNGNGLASNPSSSKCAYLAGSVVVIYDVSLGIQSHLMVSNRPPKPLSCV 76
           LVLEEVIGLTTKNGNGLASN  SSKCAYLAGSVVVIYD++LG QSHLMVSNR PKPLSCV
Sbjct: 1   LVLEEVIGLTTKNGNGLASNALSSKCAYLAGSVVVIYDMNLGTQSHLMVSNRSPKPLSCV 60

Query: 77  AMSREGRFIAAGEAGSQSSVLVWDSSTLSNVSELKGHPYRVACICFSPNGKHLVSVGGYI 136
           A+SR+G F+AAGE                                +S  GKHLVSVGGYI
Sbjct: 61  ALSRDGCFVAAGE--------------------------------YSVQGKHLVSVGGYI 88

Query: 137 YLWDWRSGKLVTKLQATSSCSTISSVGFSSDAKFIVTVGKKHLKFWTLGSSRSTRQNGGL 196
           YLWDWRSG+L+TKLQATSSCSTISSV FSSDAKF VT GKKHLKFW LGSSR T+ NGG+
Sbjct: 89  YLWDWRSGELITKLQATSSCSTISSVSFSSDAKFFVTAGKKHLKFWILGSSRKTQLNGGI 148

Query: 197 SRTT-LEIHEKLTNLSIHKEGSFTAIAFSPESSISNDNC 234
           SRTT L IHEK  NLSI K  SFT+I  S      +DNC
Sbjct: 149 SRTTSLAIHEKPANLSILKGSSFTSIT-SMWGCSGHDNC 186


>Glyma08g15400.1 
          Length = 299

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 17/142 (11%)

Query: 40  SKCAYLAGSV---VVIYDVSLGIQSHLMVSNRPPKPLSCVAMSREGRFIAAGEAGSQSSV 96
           +K   + GSV   V  +D+ +G ++    S+   +P++CV+MS +G  I AG   S   +
Sbjct: 155 TKTEIIGGSVDGTVRTFDIRIGRET----SDNLGQPVNCVSMSNDGNCILAGCLDSTLRL 210

Query: 97  LVWDSSTLSNVSELKGHP---YRVACICFSPNGKHL--VSVGGYIYLWDWRSGKLVTKLQ 151
           L  D ST   + E KGH    Y++ C C +    H+  VS  G+IY WD     +V++ +
Sbjct: 211 L--DRSTGELLQEYKGHTNKSYKLDC-CLTNTDAHVTGVSEDGFIYFWDLVDASVVSRFK 267

Query: 152 ATSSCSTISSVGFSSDAKFIVT 173
           A +  S ++SV +      +VT
Sbjct: 268 AHT--SVVTSVSYHPKENCMVT 287


>Glyma05g32110.1 
          Length = 300

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 17/142 (11%)

Query: 40  SKCAYLAGSV---VVIYDVSLGIQSHLMVSNRPPKPLSCVAMSREGRFIAAGEAGSQSSV 96
           +K   + GSV   V  +D+ +G +    +S+   + ++CV+MS +G  I AG   S   +
Sbjct: 156 TKTEIIGGSVDGTVRTFDIRIGRE----ISDNLGQSVNCVSMSNDGNCILAGCLDSTLRL 211

Query: 97  LVWDSSTLSNVSELKGHP---YRVACICFSPNGKHLV--SVGGYIYLWDWRSGKLVTKLQ 151
           L  D ST   + E KGH    Y++ C C +    H+   S  G+IY WD     +V++ +
Sbjct: 212 L--DRSTGELLQEYKGHTNKSYKLDC-CLTNTDAHVTGGSEDGFIYFWDLVDASVVSRFR 268

Query: 152 ATSSCSTISSVGFSSDAKFIVT 173
           A +  S ++SV +      +VT
Sbjct: 269 AHT--SVVTSVSYHPKENCMVT 288