Miyakogusa Predicted Gene

Lj0g3v0340149.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0340149.1 Non Chatacterized Hit- tr|J3LV29|J3LV29_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G1,39.29,0.0000000005,OS02G0605400 PROTEIN,NULL; EXTENDED
SYNAPTOTAGMIN-RELATED,NULL; C2,C2 membrane targeting protein;
C2,CUFF.23413.1
         (150 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g15550.1                                                       154   3e-38
Glyma07g32920.1                                                        99   2e-21
Glyma02g15530.1                                                        74   6e-14

>Glyma02g15550.1 
          Length = 545

 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/138 (63%), Positives = 93/138 (67%), Gaps = 7/138 (5%)

Query: 1   MSVTM-DFALLGFLFPSLWEIQVXXXXXXXXXXXYRFFTFRTADSSADRSLSDHSADDDK 59
           M+VT+ D AL  FLFPSLWEI+V           YRFFT RT    AD SL+D SA DDK
Sbjct: 1   MNVTLVDSALFAFLFPSLWEIEVAVAASVFVILAYRFFTARTG--YADPSLADSSAADDK 58

Query: 60  IGL---KGDS-ASSGYLIKLEXXXXXXXXXXXXXGTSDPYVIITCGNEKRFSSMVPGSRN 115
             +   K DS ASS YLIKLE             GTSDPY IITCGNEKRFSSMVPGSRN
Sbjct: 59  DKMGQSKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRN 118

Query: 116 PMWGEEFNFSVDELPVQV 133
           PMWGEEFNFSVDELPVQ+
Sbjct: 119 PMWGEEFNFSVDELPVQI 136


>Glyma07g32920.1 
          Length = 412

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 47/61 (77%)

Query: 73  IKLEXXXXXXXXXXXXXGTSDPYVIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQ 132
           +KLE             GTSDPY IITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQ
Sbjct: 3   LKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQ 62

Query: 133 V 133
           +
Sbjct: 63  I 63


>Glyma02g15530.1 
          Length = 233

 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 34/48 (70%), Positives = 37/48 (77%), Gaps = 4/48 (8%)

Query: 90  GTSDPYVIITCGNEKRFSSMVPGSRNPMW----GEEFNFSVDELPVQV 133
           G  DPY +ITCG +KRFSSMV  SRNPMW    GE FNFSVDELPVQ+
Sbjct: 16  GKPDPYAVITCGKDKRFSSMVSSSRNPMWGGGEGEVFNFSVDELPVQI 63