Miyakogusa Predicted Gene

Lj0g3v0336359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0336359.1 tr|G7K3G7|G7K3G7_MEDTR DNA polymerase OS=Medicago
truncatula GN=MTR_5g092100 PE=3
SV=1,34.44,0.000000000000001,seg,NULL,CUFF.22989.1
         (216 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g45910.1                                                        78   8e-15

>Glyma02g45910.1 
          Length = 1077

 Score = 77.8 bits (190), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/202 (37%), Positives = 96/202 (47%), Gaps = 35/202 (17%)

Query: 45  SLHPS----RRKIQSIQVANDVLHNSTGSVNCLQSR-EVSYCLKRPSFGLNKFNVMRHNH 99
           SL PS    RRK+QS Q++ + L NST   N +QSR + S CLK  S GLNK+N  R+  
Sbjct: 25  SLLPSQPLQRRKMQSFQISYNGLRNSTVLRNFVQSRADFSCCLKGTSVGLNKYNGARYKR 84

Query: 100 N----SPVHISAMKFSTTS------------------CSMLEEKNQMTAGENLSSYSYEK 137
           N    SPV IS+MK S  S                  C M      M A  N   +S   
Sbjct: 85  NFLCKSPVCISSMKISNASTGTLEEMTEEEELNSLRPCEMQVRTVGMAACNN--EFSTTT 142

Query: 138 QVKMMRGGDELGWAMRVNDLSKRKKEVCALN----PRCSY-PSNTTASDDQKHVSKKRGH 192
             K + GGD  GW M  + L++ KKE+   N       S+  SN  AS  Q     + G 
Sbjct: 143 LGKKLSGGDYRGWTMAKDKLTENKKEMNGSNKFERENGSFSASNGIASIAQNQAVPRNGD 202

Query: 193 NLM-LQDLGVPASSSVERSILN 213
           +++ LQD G  A SSV  S+LN
Sbjct: 203 SIIVLQDPGTHAPSSVNYSVLN 224