Miyakogusa Predicted Gene

Lj0g3v0334199.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0334199.1 Non Chatacterized Hit- tr|B9RLX3|B9RLX3_RICCO
Mads box protein, putative OS=Ricinus communis
GN=RCOM,32.32,5e-17,seg,NULL,CUFF.22806.1
         (172 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g35610.1                                                       224   3e-59
Glyma20g04500.1                                                       197   5e-51

>Glyma07g35610.1 
          Length = 359

 Score =  224 bits (571), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/168 (67%), Positives = 128/168 (76%), Gaps = 2/168 (1%)

Query: 5   FRMSVDQHLQPLSWIANGDSQNIVLPEDSNLFLYKDVEGSASSSFGRHASNLGSSSKLEI 64
           FRMSV+Q LQPLSWIAN D+ NIVLPEDSN+FL+KDVEGS SSSFG H S LGSS K ++
Sbjct: 192 FRMSVEQQLQPLSWIANDDNHNIVLPEDSNMFLHKDVEGSTSSSFGSHVSYLGSSIKNDM 251

Query: 65  STSGQENCVLIDMSSTAPLRLQLSGQIXXXXXXXXXXXXXKLQPTAAEINPHKNPVDYHV 124
           S S QEN VL DMS+TAP+RLQL+G               K QPT AEINP++NPVDYHV
Sbjct: 252 SNSAQENGVLSDMSNTAPMRLQLNGHFPYLPYNFNLPNNLKFQPT-AEINPYENPVDYHV 310

Query: 125 DGSFEDPRPGYDS-NQHGWASTSGPCAVTMFDEHLYAQASFNKVHFGF 171
           +G FE PR GYDS N H WASTSGPC VTMFDE LYAQAS  K++FGF
Sbjct: 311 NGGFEAPRSGYDSNNHHDWASTSGPCGVTMFDEQLYAQASSTKMNFGF 358


>Glyma20g04500.1 
          Length = 357

 Score =  197 bits (501), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/163 (61%), Positives = 117/163 (71%), Gaps = 2/163 (1%)

Query: 11  QHLQPLSWIANGDSQNIVLPEDSNLFLYKDVEGSASSSFGRHASNLGSSSKLEISTSGQE 70
           Q LQPLSWI N + QNIVLPEDSN+FL+KDVEGS SSSFG + +  GSS K ++S+S QE
Sbjct: 196 QQLQPLSWIVNDNDQNIVLPEDSNMFLHKDVEGSVSSSFGSYDNYFGSSIKTDMSSSTQE 255

Query: 71  NCVLIDMSSTAPLRLQLSGQIXXXXXXXXXXXXXKLQPTAAEINPHKNPVDYHVDGSFED 130
           N VL DMS+ AP+RLQL+GQ              K QP + EINPH+N VDYHV+  FE 
Sbjct: 256 NGVLSDMSNIAPMRLQLNGQFPCLQYNFNLLNNLKFQP-SVEINPHENHVDYHVNEGFEA 314

Query: 131 PRPGYDS-NQHGWASTSGPCAVTMFDEHLYAQASFNKVHFGFT 172
           PR  YDS N HGWASTSG C +TMF+E LYAQASF KV+  FT
Sbjct: 315 PRSSYDSNNHHGWASTSGSCGITMFEEQLYAQASFTKVNIDFT 357