Miyakogusa Predicted Gene

Lj0g3v0332399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332399.1 tr|B9MTJ8|B9MTJ8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_589523 PE=4
SV=1,58.23,4e-17,coiled-coil,NULL; seg,NULL,CUFF.22664.1
         (247 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma06g29560.1                                                       283   2e-76

>Glyma06g29560.1 
          Length = 306

 Score =  283 bits (723), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 163/247 (65%), Positives = 180/247 (72%), Gaps = 4/247 (1%)

Query: 1   MHALFSRDSSSKVPSFAQSRVSPENQRNSELQIFNLCXXXXXXXXXXVTKKSLRLQAXXX 60
           MHALFSRDS  K+PSFAQSRVSPE  RNSELQ+FNLC          VTKKSLRLQ    
Sbjct: 64  MHALFSRDS--KIPSFAQSRVSPE--RNSELQMFNLCYSLSSYLYFLVTKKSLRLQPSDA 119

Query: 61  XXXYPTSIELQQPXXXXXXXXXXXXXXXXERAAEEKSLLLNKIRDINELSRQEVDEIINM 120
              Y  S+ELQQP                ERAAEEKSLLLNKIRDINELSRQEVDEIINM
Sbjct: 120 SSSYAASVELQQPTLSLLNSLLFSVTTAFERAAEEKSLLLNKIRDINELSRQEVDEIINM 179

Query: 121 CVRQESLSSADNIQKRRYIAMVEMCRVVASRDRXXXXXXXXXXXXXXXXXIHLQNSSIAL 180
           CVRQ+S+SS+DNI KRRYIAMVEMCRVVASRD+                 IHLQ SS+AL
Sbjct: 180 CVRQDSVSSSDNIHKRRYIAMVEMCRVVASRDQLIILLLPLSEHVLNIILIHLQESSVAL 239

Query: 181 DPAMSTKTITYSSKCDPQQDMALFCGKLVPTLERLELLSEEKIGHNLKVFQRLTTSAKEI 240
           D  +STKTI Y +K D QQD+A+  GKLVPTLERLELLSEEK+GHNLKVF+RL TSAK++
Sbjct: 240 DSTLSTKTIAYGAKYDAQQDVAMLYGKLVPTLERLELLSEEKVGHNLKVFRRLATSAKDL 299

Query: 241 AIQKLIL 247
           AIQKLI+
Sbjct: 300 AIQKLIV 306