Miyakogusa Predicted Gene
- Lj0g3v0332239.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0332239.1 Non Chatacterized Hit- tr|B6UGI9|B6UGI9_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,56.82,2e-19,seg,NULL; Ypt/Rab-GAP domain of gyp1p,Rab-GTPase-TBC
domain; no description,NULL; TBC1 DOMAIN FAMILY,CUFF.22646.1
(148 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma05g28660.1 123 7e-29
Glyma11g36520.1 121 3e-28
Glyma18g00430.2 115 1e-26
Glyma18g00430.1 115 2e-26
Glyma08g11760.1 101 2e-22
Glyma13g23560.1 77 6e-15
>Glyma05g28660.1
Length = 443
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 56/73 (76%), Positives = 64/73 (87%)
Query: 74 HAQLLAELSRKVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKRS 133
AQLLAELS+KV+DM ELR LA QGIPDA+G+RST WKLLLGYLP DR LWS+ELAKKRS
Sbjct: 93 QAQLLAELSKKVVDMSELRSLACQGIPDAAGIRSTAWKLLLGYLPPDRGLWSAELAKKRS 152
Query: 134 QYKHFKDDLLMNP 146
QYK FK+++ MNP
Sbjct: 153 QYKQFKEEIFMNP 165
>Glyma11g36520.1
Length = 438
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 87/151 (57%), Gaps = 7/151 (4%)
Query: 2 KKRVPDWLNSPLWN--SDHHRFSAAXXXXXXXXXXXXXXXVIHDSRTRHNGXXXXXXXXX 59
KK+VP+W+NS LW+ SDH RF I ++
Sbjct: 4 KKQVPEWMNSALWSTPSDHGRFDPPSPPPPPPVSVKEDSRTIPTNQNSSPPPFSSSSVSS 63
Query: 60 XXXXXXXXX----XXRQGHAQLLAELSRKVIDMRELRRLASQGIPDASGLRSTVWKLLLG 115
Q QLLAELSRKVIDMRELRR+ASQGIPDA LR T+WKLLLG
Sbjct: 64 PTASADDISRQAQAQAQAQVQLLAELSRKVIDMRELRRVASQGIPDA-ALRPTLWKLLLG 122
Query: 116 YLPQDRALWSSELAKKRSQYKHFKDDLLMNP 146
YLP DRALW SEL KKRSQYK+FKDDLLMNP
Sbjct: 123 YLPPDRALWFSELTKKRSQYKNFKDDLLMNP 153
>Glyma18g00430.2
Length = 388
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 65/74 (87%), Gaps = 3/74 (4%)
Query: 74 HAQLLAELSRKVIDMRELRRL-ASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKR 132
HAQ A+LSRKVIDMRELRR+ ASQGI DA LR T+WKLLLGYLP DR+LWSSELAKKR
Sbjct: 64 HAQ--AQLSRKVIDMRELRRVVASQGISDAGALRPTLWKLLLGYLPPDRSLWSSELAKKR 121
Query: 133 SQYKHFKDDLLMNP 146
SQYK+FKDDLL NP
Sbjct: 122 SQYKNFKDDLLTNP 135
>Glyma18g00430.1
Length = 418
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 65/74 (87%), Gaps = 3/74 (4%)
Query: 74 HAQLLAELSRKVIDMRELRRL-ASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKR 132
HAQ A+LSRKVIDMRELRR+ ASQGI DA LR T+WKLLLGYLP DR+LWSSELAKKR
Sbjct: 64 HAQ--AQLSRKVIDMRELRRVVASQGISDAGALRPTLWKLLLGYLPPDRSLWSSELAKKR 121
Query: 133 SQYKHFKDDLLMNP 146
SQYK+FKDDLL NP
Sbjct: 122 SQYKNFKDDLLTNP 135
>Glyma08g11760.1
Length = 337
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 51/59 (86%)
Query: 88 MRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKRSQYKHFKDDLLMNP 146
M ELR LA QGIPDA+G+RSTVWKLLLGYLP DR LWS+ELAKKR QYK FK+++ MNP
Sbjct: 1 MSELRSLACQGIPDAAGIRSTVWKLLLGYLPPDRGLWSAELAKKRFQYKQFKEEIFMNP 59
>Glyma13g23560.1
Length = 342
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 81 LSRKVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKRSQYKHFKD 140
LS++ I++ +L+R+A+ GIPD GLR+T WKLLLGYLP LW +L + R +Y + K+
Sbjct: 1 LSQREINLEKLQRIANIGIPDGGGLRATAWKLLLGYLPSSHDLWDKKLKENRQKYANLKE 60
Query: 141 DLLMNP 146
DLL NP
Sbjct: 61 DLLCNP 66