Miyakogusa Predicted Gene

Lj0g3v0332049.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332049.1 Non Chatacterized Hit- tr|D7M4K0|D7M4K0_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,57.14,6e-19,no
description,NULL; Rhomboid,Peptidase S54, rhomboid domain;
seg,NULL,CUFF.22630.1
         (188 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g25950.1                                                       164   4e-41

>Glyma17g25950.1 
          Length = 281

 Score =  164 bits (416), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 76/95 (80%), Positives = 82/95 (86%)

Query: 64  CSKIKNSDLVPQLELGKPENKRKPEKRASGIFWVILLNIGIFVADKFFQVNGIKAMYLYH 123
           C     SD++ QLELGKPE K KPEKR +GIFW+ILLNI IFVAD FF+VNGIKA+YLYH
Sbjct: 63  CCNSNKSDIMSQLELGKPEQKGKPEKRVNGIFWIILLNIAIFVADHFFRVNGIKALYLYH 122

Query: 124 NRPSWYQFVTATFCHANWKHLSSNLFFLYIFGKAV 158
           N PSWYQFVTATFCHANWKHLSSNLFFLYIFGK V
Sbjct: 123 NWPSWYQFVTATFCHANWKHLSSNLFFLYIFGKLV 157