Miyakogusa Predicted Gene

Lj0g3v0331349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0331349.1 tr|A9SZH0|A9SZH0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_167287,37.11,3e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; coiled-coil,NULL; seg,NULL; CRM,RNA-binding, CRM
do,CUFF.22573.1
         (202 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g01700.1                                                       145   2e-35
Glyma20g34730.1                                                        80   2e-15
Glyma10g32920.1                                                        78   7e-15
Glyma01g18990.1                                                        62   4e-10
Glyma14g25560.1                                                        61   8e-10
Glyma09g31620.1                                                        61   9e-10
Glyma08g04630.1                                                        60   1e-09
Glyma07g10270.1                                                        60   2e-09
Glyma09g25550.1                                                        60   2e-09
Glyma17g06210.2                                                        55   3e-08
Glyma17g06210.1                                                        55   4e-08

>Glyma19g01700.1 
          Length = 993

 Score =  145 bits (367), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/137 (54%), Positives = 86/137 (62%), Gaps = 31/137 (22%)

Query: 63  GEIFVPLPHNIPKHRVGHTLDPSWSTPENPVPLPGTGIARLSANELXXXXXXXXXXXXXX 122
           GEIFVPLP  +P  RVGHT+DP+W+  E                                
Sbjct: 89  GEIFVPLPQQLPTRRVGHTIDPTWAKRER------------------------------- 117

Query: 123 XXXXVPTLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIV 182
               VPTLAELSL ++EI RLTT G  M+QK++VGKAG+TEGIVNGIHERWR  EVVRIV
Sbjct: 118 REDKVPTLAELSLSDAEIRRLTTAGLAMRQKLRVGKAGLTEGIVNGIHERWRSFEVVRIV 177

Query: 183 CDDICRINMKRTHDLLE 199
           C+D+ R NMKRTHDLLE
Sbjct: 178 CEDLSRFNMKRTHDLLE 194


>Glyma20g34730.1 
          Length = 692

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 53/71 (74%)

Query: 129 TLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICR 188
           +LAEL+LP SE+ RL  L F+ K K ++G++G+T+ +V+ IHERW+ SE+VR+  +    
Sbjct: 148 SLAELTLPESELKRLLKLTFEKKHKTRIGRSGVTQAVVDKIHERWKTSEIVRLKFEGEAA 207

Query: 189 INMKRTHDLLE 199
           +NMKR H++LE
Sbjct: 208 LNMKRMHEILE 218


>Glyma10g32920.1 
          Length = 577

 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 52/71 (73%)

Query: 129 TLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICR 188
           +LAEL+LP SE+ RL  L F+ K K ++G++G+T+  V+ I+ERW+ SE+VR+  +    
Sbjct: 199 SLAELTLPESELRRLLKLTFEKKHKTRIGRSGVTQAAVDKIYERWKTSEIVRLKFEGEAA 258

Query: 189 INMKRTHDLLE 199
           +NMKR H++LE
Sbjct: 259 LNMKRMHEILE 269


>Glyma01g18990.1 
          Length = 104

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 63  GEIFVPLPHNIPKHRVGHTLDPSWSTPENPVPLPGTGIARLSANELXXXXXXXXXXXXXX 122
            EI V  PH++PK  VGHT +P  S P  P+P+PGT IA LS +E+              
Sbjct: 23  SEIHVLFPHDLPKRHVGHTFEPRCSMPLKPMPVPGTDIAALSKSEV-MRQKKLRAEESRR 81

Query: 123 XXXXVPTLAELSLPNSEIMRLTT 145
               V TL ELSL +SEI  LTT
Sbjct: 82  RKELVLTLVELSLSDSEIWHLTT 104


>Glyma14g25560.1 
          Length = 68

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 78  VGHTLDPSWSTPENPVPLPGTGIARLSANELXXXXXXXXXXXXXXXXXXVPTLAELSLPN 137
           +GHT +PSWSTP  P+ +PGTGIA LS +E+                  VPTL ELSL N
Sbjct: 1   MGHTFEPSWSTPLKPMSVPGTGIAALSKSEV--RRQNKLRAEELRRKELVPTLVELSLSN 58

Query: 138 SEIMRLTTL 146
           SEI  LTTL
Sbjct: 59  SEIRHLTTL 67


>Glyma09g31620.1 
          Length = 740

 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 50/73 (68%)

Query: 127 VPTLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDI 186
            P+LA+L+L +  + RL   G ++++++ V KAG+TE ++  IH+RWR+ E+VR+   + 
Sbjct: 151 APSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTEEVMEKIHKRWRKEELVRLKFHEE 210

Query: 187 CRINMKRTHDLLE 199
              +M++ H+++E
Sbjct: 211 LAKDMRKAHEIVE 223


>Glyma08g04630.1 
          Length = 574

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query: 129 TLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICR 188
           TLAE +L   E+ RL TLG  +K+KI + KAG+T  +++ IH  W   E+VR+   +   
Sbjct: 11  TLAEQTLVEEELRRLRTLGMSLKEKITIPKAGLTRAVLDRIHRHWSNCELVRLKFHEFLA 70

Query: 189 INMKRTHDLLE 199
            NMK  H ++E
Sbjct: 71  QNMKLAHQIVE 81


>Glyma07g10270.1 
          Length = 781

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 50/73 (68%)

Query: 127 VPTLAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDI 186
            P+LA+L+L +  + RL   G ++++++ V KAG+T+ ++  IH+RWR+ E+VR+   + 
Sbjct: 176 APSLADLTLEDELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWRKEELVRLKFHEE 235

Query: 187 CRINMKRTHDLLE 199
              +M++ H+++E
Sbjct: 236 LAKDMRKAHEIVE 248


>Glyma09g25550.1 
          Length = 71

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 77  RVGHTLDPSWSTPENPVPLPGTGIARLSANELXXXXXXXXXXXXXXXXXXVPTLAELSLP 136
           RVGHT + SWSTP  PVP+PGTGIA LS +E+                  V TL +LSL 
Sbjct: 2   RVGHTFELSWSTPLKPVPVPGTGIAALSKSEV-RRQKKLWAEESRRRKELVSTLVDLSLS 60

Query: 137 NSEIMRLTTL 146
           +SEI  LTTL
Sbjct: 61  DSEIRHLTTL 70


>Glyma17g06210.2 
          Length = 692

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)

Query: 130 LAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICRI 189
           LAE ++P  E+ RL  +  +M ++  VG  GIT+ +V  +H++WR +EVV+         
Sbjct: 163 LAERTIPEHELRRLRKIALRMMERFDVGVKGITQELVASVHQKWRDAEVVKFKFGIPLSA 222

Query: 190 NMKRTHDLLE 199
           +MK+ H +LE
Sbjct: 223 HMKKAHQILE 232


>Glyma17g06210.1 
          Length = 747

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 42/70 (60%)

Query: 130 LAELSLPNSEIMRLTTLGFQMKQKIKVGKAGITEGIVNGIHERWRRSEVVRIVCDDICRI 189
           LAE ++P  E+ RL  +  +M ++  VG  GIT+ +V  +H++WR +EVV+         
Sbjct: 163 LAERTIPEHELRRLRKIALRMMERFDVGVKGITQELVASVHQKWRDAEVVKFKFGIPLSA 222

Query: 190 NMKRTHDLLE 199
           +MK+ H +LE
Sbjct: 223 HMKKAHQILE 232