Miyakogusa Predicted Gene

Lj0g3v0330509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0330509.1 Non Chatacterized Hit- tr|C0HJ73|C0HJ73_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,60.29,0.00000000000003,seg,NULL,CUFF.22505.1
         (178 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g47210.1                                                       255   2e-68
Glyma18g38450.1                                                       249   8e-67

>Glyma08g47210.1 
          Length = 177

 Score =  255 bits (651), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/163 (76%), Positives = 139/163 (85%), Gaps = 1/163 (0%)

Query: 16  CFPNCSENRTVPLIHHQFSSFNSLLKLNKQAFLPNTHFRISRSQKPRSSFVVFAAQSNFL 75
           C  NC + RT+   HH F S NSLL+L KQ+FL NTHF+ SR+QKP SSFVV AAQSNF+
Sbjct: 16  CISNCRQKRTLVPTHHAFHSPNSLLRLKKQSFLLNTHFKSSRTQKPPSSFVVSAAQSNFV 75

Query: 76  KVLQNAWRVGRDGVDAGTNLVPNSVPRPIARISVTIAALSVTLFVLKSLLSTVFFVLAIV 135
           KVLQNAW+VGRDG++AGTNL PNSVPRPIARISVTI ALSVTLFVLK+ LST FF+LA +
Sbjct: 76  KVLQNAWKVGRDGIEAGTNLAPNSVPRPIARISVTIVALSVTLFVLKAFLSTAFFILATI 135

Query: 136 GLAYFAYLAFNKDQEEPSGNGGTTSPPVDDPVEEARKIMDKYK 178
           GLAYFAYLAFNKDQ  PSGNGGT S P+DDPVEEARKIM+KYK
Sbjct: 136 GLAYFAYLAFNKDQ-GPSGNGGTASTPMDDPVEEARKIMEKYK 177


>Glyma18g38450.1 
          Length = 172

 Score =  249 bits (637), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 123/163 (75%), Positives = 137/163 (84%), Gaps = 6/163 (3%)

Query: 16  CFPNCSENRTVPLIHHQFSSFNSLLKLNKQAFLPNTHFRISRSQKPRSSFVVFAAQSNFL 75
           C  NC  N      HHQF S NSLL+L KQ FL N +F+ SR+QKPRSSFVV AAQSNF+
Sbjct: 16  CISNCGHN-----THHQFHSPNSLLRLKKQTFLTNIYFKSSRTQKPRSSFVVSAAQSNFV 70

Query: 76  KVLQNAWRVGRDGVDAGTNLVPNSVPRPIARISVTIAALSVTLFVLKSLLSTVFFVLAIV 135
           K LQNAW+VGRDG++AGTNLVP+SVPRPIARISVTI ALSVTLFVLK+ LST FF+LA +
Sbjct: 71  KGLQNAWKVGRDGIEAGTNLVPDSVPRPIARISVTIVALSVTLFVLKAFLSTAFFILATI 130

Query: 136 GLAYFAYLAFNKDQEEPSGNGGTTSPPVDDPVEEARKIMDKYK 178
           GLAYFAYLAFNKDQ  PSGNGGTTS P+DDPVEEARKIM+KYK
Sbjct: 131 GLAYFAYLAFNKDQ-GPSGNGGTTSTPMDDPVEEARKIMEKYK 172