Miyakogusa Predicted Gene

Lj0g3v0326949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326949.1 tr|G7LDQ8|G7LDQ8_MEDTR Translation initiation
factor OS=Medicago truncatula GN=MTR_8g061130 PE=3
SV=,67.97,2.94273e-44,Ribosomal protein S1-like RNA-binding
domain,RNA-binding domain, S1; Nucleic acid-binding
proteins,N,CUFF.22240.1
         (141 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g08790.1                                                       146   6e-36
Glyma05g00260.1                                                       141   2e-34

>Glyma17g08790.1 
          Length = 138

 Score =  146 bits (369), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 68/76 (89%), Positives = 73/76 (96%)

Query: 61  ADKSSEQKWVHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRKNFVRILPGDRVKVEVS 120
            DKS EQKWVHEGLI ESLPNGMFRVRLDNEDLILGY+SGKIRKN+VRILPGDRVKVEV+
Sbjct: 60  PDKSGEQKWVHEGLIMESLPNGMFRVRLDNEDLILGYISGKIRKNYVRILPGDRVKVEVT 119

Query: 121 RYDSSKGRIVYRLRNT 136
           RYDSSKGRIVYRLR++
Sbjct: 120 RYDSSKGRIVYRLRSS 135


>Glyma05g00260.1 
          Length = 143

 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 72/76 (94%)

Query: 61  ADKSSEQKWVHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRKNFVRILPGDRVKVEVS 120
            DKS EQKWV EGL+ ESLPNGMFRVRLDNEDLILGY+SGKIRKN+VRILPGDRVKVEV+
Sbjct: 65  GDKSGEQKWVLEGLVMESLPNGMFRVRLDNEDLILGYISGKIRKNYVRILPGDRVKVEVT 124

Query: 121 RYDSSKGRIVYRLRNT 136
           RYDSSKGRIVYRLR++
Sbjct: 125 RYDSSKGRIVYRLRSS 140